RNA id: TCONS_00021755


Basic Information

Item Value
RNA id TCONS_00021755
length 580
lncRNA type intronic
GC content 0.34
exon number 1
gene id XLOC_010258
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 47998832 ~ 47999411 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAAAAGTTCtttaaaaggtctttaaaagcTTGTTTAAATCCTTAGAAATGTTAGCACCCAGCAGCTACAAGCAACATTcacataattcatttttatttttttttatttataaacaaactcTTTTAACAATAATGGAacgttaataaaacatttaattaaagtccccttaaggcaagtcatttcacacGGTGCCcatctgtctgaatggggaaacatcaaattctacaaaaatgtttgccaagcttacgagtacattacatatttggaattgTCAATAAAATTAAACTACAACGGTCTCATAAATTTACTTCCTAAACATACAAATCGAgcattttttcaggttgcccgagcTAATGCACATGAAGTTCAAAAGAAACGAGATtacaacaccaacctcatttatgggcGTTCTACAAactatcatcctctgaataacaAGCGTCAGAAGTAATGGTCTTCAGAAGTAATTCACagcttggtcttgatggtgaatcttcTCTAGAAATGTCAGTGACTCTTTGTTTATGAAGTGGTAGGCATTTGAGTAATTGCTGCTGTACGTCTGAAAGAACTTAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021754 lncRNA upstream 234013 47764225 ~ 47764819 (+) True XLOC_010257
TCONS_00020271 lncRNA upstream 567915 47428789 ~ 47430917 (+) True XLOC_010256
TCONS_00021753 lncRNA upstream 609454 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00021752 lncRNA upstream 609454 47383795 ~ 47389378 (+) True XLOC_010255
TCONS_00022036 lncRNA upstream 1168595 46826588 ~ 46830237 (+) True XLOC_010249
TCONS_00021756 lncRNA downstream 668903 48668314 ~ 48677034 (+) False XLOC_010264
TCONS_00020281 lncRNA downstream 671933 48671344 ~ 48677034 (+) False XLOC_010264
TCONS_00020283 lncRNA downstream 671946 48671357 ~ 48677034 (+) False XLOC_010264
TCONS_00022037 lncRNA downstream 671949 48671360 ~ 48677034 (+) False XLOC_010264
TCONS_00020280 lncRNA downstream 672049 48671460 ~ 48677034 (+) False XLOC_010264
TCONS_00020270 mRNA upstream 548828 47428735 ~ 47450004 (+) False XLOC_010256
TCONS_00020269 mRNA upstream 548921 47428721 ~ 47449911 (+) False XLOC_010256
TCONS_00020268 mRNA upstream 654685 47308856 ~ 47344147 (+) True XLOC_010254
TCONS_00020267 mRNA upstream 766686 47207691 ~ 47232146 (+) True XLOC_010253
TCONS_00020266 mRNA upstream 794531 47203422 ~ 47204301 (+) True XLOC_010252
TCONS_00020275 mRNA downstream 461462 48460873 ~ 48573510 (+) True XLOC_010262
TCONS_00020276 mRNA downstream 616809 48616220 ~ 48643191 (+) False XLOC_010263
TCONS_00020277 mRNA downstream 616886 48616297 ~ 48643180 (+) False XLOC_010263
TCONS_00020278 mRNA downstream 627369 48626780 ~ 48643172 (+) False XLOC_010263
TCONS_00020279 mRNA downstream 632001 48631412 ~ 48641181 (+) True XLOC_010263
TCONS_00020265 other upstream 986375 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020229 other upstream 2331980 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 2410502 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 3293678 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 3310897 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020272 other downstream 23882 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 158898 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 257602 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 1548360 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020308 other downstream 2240912 50240323 ~ 50254974 (+) True XLOC_010278