Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001602 |
| length | 964 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 2 |
| gene id | XLOC_001007 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 8962624 ~ 8966046 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060334 | regulation of interferon-gamma-mediated signaling pathway | biological_process |
| GO:0046854 | phosphatidylinositol phosphorylation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0046426 | negative regulation of receptor signaling pathway via JAK-STAT | biological_process |
| GO:0005942 | phosphatidylinositol 3-kinase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090313-141 | Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; regulation of growth; and regulation of signal transduction. Predicted to be located in cytoplasm. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in head kidney. Human ortholog(s) of this gene implicated in ovarian carcinoma; prostate cancer; and urinary bladder cancer. Orthologous to human SOCS1 (suppressor of cytokine signaling 1). |
| ensembl_id | ENSDART00000136198 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00001597 | lncRNA | downstream | 309976 | 8650109 ~ 8652648 (-) | False | XLOC_001004 |
| TCONS_00001590 | lncRNA | downstream | 337358 | 8615853 ~ 8625266 (-) | False | XLOC_001002 |
| TCONS_00002917 | lncRNA | downstream | 337682 | 8612575 ~ 8624942 (-) | False | XLOC_001002 |
| TCONS_00003336 | lncRNA | upstream | 8454 | 8974500 ~ 8977960 (-) | False | XLOC_001008 |
| TCONS_00001604 | lncRNA | upstream | 8454 | 8974500 ~ 8977963 (-) | True | XLOC_001008 |
| TCONS_00003337 | lncRNA | upstream | 12859 | 8978905 ~ 8980671 (-) | False | XLOC_001009 |
| TCONS_00003338 | lncRNA | upstream | 115796 | 9081842 ~ 9082772 (-) | True | XLOC_001010 |
| TCONS_00003339 | lncRNA | upstream | 172592 | 9138638 ~ 9139160 (-) | True | XLOC_001015 |
| TCONS_00001600 | mRNA | downstream | 33783 | 8763429 ~ 8928841 (-) | False | XLOC_001006 |
| TCONS_00001601 | mRNA | downstream | 44722 | 8765624 ~ 8917902 (-) | True | XLOC_001006 |
| TCONS_00001599 | mRNA | downstream | 270655 | 8673061 ~ 8691969 (-) | True | XLOC_001005 |
| TCONS_00001598 | mRNA | downstream | 309239 | 8650713 ~ 8653385 (-) | True | XLOC_001004 |
| TCONS_00001594 | mRNA | downstream | 309969 | 8650096 ~ 8652655 (-) | False | XLOC_001004 |
| TCONS_00001605 | mRNA | upstream | 12862 | 8978908 ~ 8980665 (-) | True | XLOC_001009 |
| TCONS_00001606 | mRNA | upstream | 134401 | 9100447 ~ 9104631 (-) | False | XLOC_001011 |
| TCONS_00001607 | mRNA | upstream | 134427 | 9100473 ~ 9114936 (-) | False | XLOC_001011 |
| TCONS_00001608 | mRNA | upstream | 138993 | 9105039 ~ 9109699 (-) | False | XLOC_001011 |
| TCONS_00001609 | mRNA | upstream | 147584 | 9113630 ~ 9115034 (-) | True | XLOC_001011 |
| TCONS_00001595 | other | downstream | 309969 | 8650109 ~ 8652655 (-) | False | XLOC_001004 |
| TCONS_00001587 | other | downstream | 409326 | 8552750 ~ 8553298 (-) | True | XLOC_000999 |
| TCONS_00001570 | other | downstream | 986855 | 7970406 ~ 7975769 (-) | True | XLOC_000989 |
| TCONS_00001564 | other | downstream | 1042418 | 7920119 ~ 7920206 (-) | True | XLOC_000985 |
| TCONS_00001563 | other | downstream | 1043057 | 7919480 ~ 7919567 (-) | True | XLOC_000984 |
| TCONS_00001610 | other | upstream | 152054 | 9118100 ~ 9118671 (-) | False | XLOC_001012 |
| TCONS_00001617 | other | upstream | 231813 | 9197859 ~ 9197966 (-) | True | XLOC_001018 |
| TCONS_00001629 | other | upstream | 493964 | 9460010 ~ 9486080 (-) | False | XLOC_001025 |
| TCONS_00001646 | other | upstream | 774756 | 9740802 ~ 9816875 (-) | True | XLOC_001029 |
| TCONS_00001656 | other | upstream | 1097455 | 10063501 ~ 10064568 (-) | False | XLOC_001036 |
