RNA id: TU552994


Basic Information

Item Value
RNA id TU552994
length 350
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G481898
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2717750 ~ 2719934 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCAACTTTTGAAGAAATCCAAATATATACACCAAATATAAACCATCAGGACACTGTTGTTTTTTTTTGGTAAAAAAGAAAAGAAAAAAAGTGGCACACCAAATGGAAGCTTTTAAGGACACATAGGCGTGAATGGCCTCTACATTAACTCGAGTGGACTAGCCAATGGAATACGCTTTAGGAACTTACCACCAGGCTTATTGAAGCCCCCTCTGTCTCCAGCGATGCCCATGCCACCGCGGCCCATACCCCCACGCCCCCGAGGACCATAACCATCTCTGCCTGCATCTCCCGGGTATCCACCCCGCTGCTGTGATCCTGGGTAGCCTCCGCTCACGCCACCCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552995 lncRNA upstream 65428 2644800 ~ 2652322 (+) True G481899
TU552950 lncRNA upstream 162641 2552923 ~ 2555109 (+) True G481855
TU552946 lncRNA upstream 206576 2509349 ~ 2511174 (+) True G481851
TU552955 lncRNA upstream 285290 2432184 ~ 2432460 (+) True G481860
TU552851 lncRNA upstream 346434 2369930 ~ 2371316 (+) True CI01000339_02369904_02370487
TU553106 lncRNA downstream 119921 2839855 ~ 2840668 (+) True G482004
TU553139 lncRNA downstream 181732 2901666 ~ 2901935 (+) True G482035
TU553152 lncRNA downstream 229688 2949622 ~ 2950082 (+) True G482048
TU553175 lncRNA downstream 360459 3080393 ~ 3083969 (+) True G482069
TU553245 lncRNA downstream 364233 3084167 ~ 3084374 (+) True G482139
CI01000339_02534217_02550941.mRNA mRNA upstream 166526 2534217 ~ 2551224 (+) True CI01000339_02534217_02550941
CI01000339_02520632_02526538.mRNA mRNA upstream 190846 2519398 ~ 2526904 (+) True CI01000339_02520632_02526538
CI01000339_02369904_02370487.mRNA mRNA upstream 347165 2369319 ~ 2370585 (+) False CI01000339_02369904_02370487
CI01000339_02362904_02366296.mRNA mRNA upstream 351250 2362684 ~ 2366500 (+) True CI01000339_02362904_02366296
CI01000339_02355753_02358594.mRNA mRNA upstream 358003 2355159 ~ 2359747 (+) True CI01000339_02355753_02358594
CI01000339_02724520_02726734.mRNA mRNA downstream 4586 2724520 ~ 2727177 (+) True CI01000339_02724520_02726734
CI01000339_02821530_02821886.mRNA mRNA downstream 100642 2820576 ~ 2821976 (+) False CI01000339_02821530_02821886
CI01000339_02827191_02829073.mRNA mRNA downstream 107257 2827191 ~ 2829258 (+) True CI01000339_02827191_02829073
CI01000339_02881178_02904181.mRNA mRNA downstream 160008 2879942 ~ 2905073 (+) True CI01000339_02881178_02904181
CI01000339_02906594_02907565.mRNA mRNA downstream 186356 2906290 ~ 2907736 (+) True CI01000339_02906594_02907565
TU552823 other upstream 518941 2196600 ~ 2198809 (+) True CI01000339_02196706_02198050
TU552822 other upstream 519000 2196600 ~ 2198750 (+) False CI01000339_02196706_02198050
TU552307 other upstream 1140047 1574534 ~ 1574698 (+) True G481338
TU552290 other upstream 1427017 1289321 ~ 1290733 (+) True G481321
TU551697 other upstream 2077373 634414 ~ 640377 (+) True G480761
TU553082 other downstream 100826 2820760 ~ 2823479 (+) False CI01000339_02821530_02821886
TU553085 other downstream 100826 2823730 ~ 2823893 (+) True G481984
TU553251 other downstream 367859 3087793 ~ 3089562 (+) False G482144
TU553252 other downstream 367859 3087793 ~ 3089705 (+) False G482144
TU554981 other downstream 2507389 5227323 ~ 5239784 (+) False G483672

Expression Profile