Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU555338 |
| length | 1382 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G483989 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000339 |
| NCBI id | null |
| chromosome length | 8057057 |
| location | 6306103 ~ 6358859 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU555330 | lncRNA | upstream | 11586 | 6294216 ~ 6294517 (+) | True | G483981 |
| TU555329 | lncRNA | upstream | 12200 | 6293700 ~ 6293903 (+) | True | G483980 |
| TU555256 | lncRNA | upstream | 98937 | 6202390 ~ 6207166 (+) | True | G483907 |
| TU555234 | lncRNA | upstream | 259227 | 6046419 ~ 6046876 (+) | True | G483894 |
| TU555157 | lncRNA | upstream | 385380 | 5918828 ~ 5920723 (+) | True | G483822 |
| TU555251 | lncRNA | downstream | 111996 | 6470855 ~ 6472834 (+) | False | G483904 |
| TU555252 | lncRNA | downstream | 111996 | 6470855 ~ 6472512 (+) | True | G483904 |
| TU555359 | lncRNA | downstream | 127161 | 6486020 ~ 6486253 (+) | True | G484010 |
| TU555360 | lncRNA | downstream | 130958 | 6489817 ~ 6490029 (+) | True | G484011 |
| TU555272 | lncRNA | downstream | 134496 | 6493355 ~ 6493660 (+) | True | G483923 |
| CI01000339_06255704_06263865.mRNA | mRNA | upstream | 42238 | 6255704 ~ 6263865 (+) | True | CI01000339_06255704_06263865 |
| CI01000339_06238852_06254371.mRNA | mRNA | upstream | 51625 | 6238325 ~ 6254478 (+) | True | CI01000339_06238852_06254371 |
| CI01000339_06216378_06233911.mRNA | mRNA | upstream | 71967 | 6216378 ~ 6234136 (+) | True | CI01000339_06216378_06233911 |
| CI01000339_06208270_06213269.mRNA | mRNA | upstream | 91908 | 6208270 ~ 6214195 (+) | True | CI01000339_06208270_06213269 |
| CI01000339_06069549_06075897.mRNA | mRNA | upstream | 230003 | 6069549 ~ 6076100 (+) | True | CI01000339_06069549_06075897 |
| CI01000339_06430066_06464538.mRNA | mRNA | downstream | 70945 | 6429804 ~ 6464951 (+) | True | CI01000339_06430066_06464538 |
| CI01000339_06497398_06568391.mRNA | mRNA | downstream | 138539 | 6497398 ~ 6568391 (+) | True | CI01000339_06497398_06568391 |
| CI01000339_06701367_06719938.mRNA | mRNA | downstream | 342508 | 6701367 ~ 6720563 (+) | True | CI01000339_06701367_06719938 |
| CI01000339_06722035_06727455.mRNA | mRNA | downstream | 363176 | 6722035 ~ 6727520 (+) | True | CI01000339_06722035_06727455 |
| CI01000339_06728344_06732901.mRNA | mRNA | downstream | 369485 | 6728344 ~ 6732938 (+) | True | CI01000339_06728344_06732901 |
| TU555231 | other | upstream | 262069 | 6041817 ~ 6044034 (+) | True | CI01000339_06041909_06043927 |
| TU554999 | other | upstream | 703842 | 5600480 ~ 5602261 (+) | True | CI01000339_05599544_05600935 |
| TU554997 | other | upstream | 704028 | 5600461 ~ 5602075 (+) | False | CI01000339_05599544_05600935 |
| TU554981 | other | upstream | 1066319 | 5227323 ~ 5239784 (+) | False | G483672 |
| TU553252 | other | upstream | 3216398 | 3087793 ~ 3089705 (+) | False | G482144 |
| TU555509 | other | downstream | 587527 | 6946386 ~ 6966146 (+) | True | G484139 |
| TU555497 | other | downstream | 587934 | 6946793 ~ 6947480 (+) | True | G484134 |
| TU555545 | other | downstream | 755724 | 7114583 ~ 7115459 (+) | True | G484172 |
