RNA id: CI01000340_03342324_03363204.mRNA


Basic Information

Item Value
RNA id CI01000340_03342324_03363204.mRNA
length 2901
RNA type mRNA
GC content 0.47
exon number 17
gene id CI01000340_03342324_03363204
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3342301 ~ 3363619 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCCAATAAAATATGAAAATGTATAAAAATTTTGGAAAATAGCAATATTTTAATTTTCTGTAAAAAGTTCATTTTTACTTTCTTATGTGGAATACTGATTACAATTTTAGTTGTTTAAAATTGTAATAAGAAGCCTACCACATTGCAGCTTAAAATCTATCTATATCTAACAATGCCATATTTTGAAATAAATGTTTAATAATGAAACATTATACAAATATCAAAATATATAAAGAGTAAAGTTTCAGATTATTGTGGATAACTATCTGTAGTCCTCCAGTATCCCATGATACCACCTGCTCAGTGCTCAGCGCGGTGACCTCGCAAGTAGCTTCTGTAAAGGAGGTGGCTCGTTGTTGCGTACGCACGCTAGTGTGTGAGTTTGCGCGTTAGCTGAGTGCTGCTGCGTGGATGATGGCTGCGTCGAAGCCCGTAGAGCCTCAGTCCGGGAGTGGGCTCCCTCGCTGGCAGCTGGCACTCCTAGTAGGGACACCGATCGTCCTAGGCGTCGGAGCTGTTTACCTGTGGAACCGAAGTCGCAGCAAAGAAAAGCAAGGGAAAAAGAATGGAGAGAGGAAAACTCCCGAAGGAAGCGCTAGCCCTGTCCAGGGCCAGCACGGAGCGACTAACCCAGAGCTGGAGAACATGAGTCCCCTTGACAGAGCACAGTCTGCCAAGAATAAGGGCAACAAATACTTCAAGGCTGGCAAATATGACCAGGCCATCCAGTGCTACACAGAAGCCATCAGCCTATGTCCCAAAGAACAGAAAGGAGACCTATCCACCTTCTACCAGAATAGAGCTGCAGCCTACGAGCAACAGATGAAATGGACAGAAGTGATACAGGATTGTTCTCAGGCAGTCGAGCTGAATCCTTGCTATGTAAAAGCCCTTTTTAGGCGTGCCAAAGCACTGGAAAAACTGGATAACAAGAAGGAATGCCTAGAAGATGTGACAGCAGTATGTATTCTAGAGGTTTTCCAGAACCAGCAGAGTATGCTACTGGCAGACAAGGTGCTGAAACAGCTTGGAAAAGAGAAGGCCAAAGAGAAATACAAGAACCGAGAGCCCCTTATGCCATCTCCTCAGTTCATCAAGTCCTACTTCAGCTCCTTTACTGATGACATCATCTCACAGCCCCTACAGAAAGGTGAAAAGAAGGATGAGGATAAAGACAAAGAGGGTGAGGCCTCAGAGGTCACAGGAAGCTCAGGCTACCTAAAGGCTAAGCAGTACATGGAGGAGGAGAACTATGATAAGATCATCAGTGAGTGCACAAAGGAAGTTGAGTCTGGAGGCAGGTACACAGCTGAAGCTCTTCTGCTGAGAGCCACATTCTACCTGCTGATTGGCAATGCTACAGCTGCACAGCCTGACCTTGACCGTGTCATTAACATGGACAATGCCAGTGTCAAGTTGCGTGCTAATGCGCTAATTAAACGTGGAAGCATGTACATGCAGCAGCAGCAACCCCAGCTCTCCACGCAGGACTTCAACATGGCTGCAGAGATTGATCCTCGTAATGCAGACGTCTACCACCACAGGGGACAGTTGAAGATTCTGCTGGATCAGGTGGAGGAGGCTGTAGGAGATTTTGATGAGTGTATAAAACTTAGACCAGATTCTGCACTTGCCCAGGCCCAGAAGTGCTTTGCATTGTACCGACAGGCATACACTGGAAACAACCCATCCCAGGTTCAGAAAGCCATGGATGGCTTTGAGGATGTCATTAGGAAGTTTCCAAAGTGTGCTGAGGGCTATGCTCTGTATGCACAGCTTCAATGGAAGCAAGATCTGGAAATGGGGCTTGAACTCATAAGCAAAGCCATTGAAATTGACAATAAATGCGACTTTGCTTACGAAACTATGGGAACCATTGAAGTCCAAAGAGGCAATCTGGACAAGGCTATAGACATGTTCAACAAGGCCATCAACTTGGCCAAGTCAGAGATGGAGATGGCCCATCTCTACTCCCTCTGTGATGCTGCTTATGCCCAGACGGAGACTAGAGTCAAGCGCGTGCATGTGGTCCTAGCGACAGGACGCTGGTTTTTACGACACAGTTTGACGTGGACCGTCACCACAGCAATGGCGGATGCTGTAGGGGAAGTGCTTCAAGGCAGCTGGAATCAGGATCTGGCTGATGCTCTTGACTCGGCAGAATGTGATCTGGATACTGATCAGGATAGTGTCATCCAGGTCCGAAACCTTCCCCCACCACAGCGGGCCAAGTTATGGATGATTGCTTTGAACGTGTCTGGTAAAGGAGATAGTCTGTCCTCATGGGATGGGGCTTTGGACCTTGCAGAACAGACGCTCATTCACAGCCGCAGTCAGCAGATCATTGATGAGCTGGGGATACCAGTGGAGGAAGGGCGGGACCTGGTGTCAGATGTGGAGTCAGTGATCACCTTCTACTGCAAGTCCAGAAATGTCACCTTCACTCCAGATCTTAGTTGGCCACACATCCTCAAACCACTCCTGGGTTTACAGCTGTCCCGCAGAGACCTCTACAACTGCTTCTACGCCATCATGAATAAATACATCCCACGAGACTGTTTTGTGAAAGGACGGCCATTTCACCTGTTCAGGCTCCTGTTGCAGTACCATGAGCCTGAACTCTGCTCCTTCCTGGACACAAAAAAGATCACTCCTGATTCCTATGCCATCAGTTGGCTGGGCAGTCTCTTTTCTAGCCACTGTCTCCCTGAGGTCACACAGGCCTTGTGGGATATTTATCTCCAACAGGCTGACCCTTTTCTCATCTTCTTCCTCATGCTCATCATCCTTGTCAATGCCAAGTATGTGACAGTTCAGACTGTTCAGTGTACTCAGTTGATTAAAGGGGTCCTATTATGCTCATTTACAGGTTTATAATTTTGTTTATGGCATCTACTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17768 TOM70; mitochondrial import receptor subunit TOM70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560611 lncRNA downstream 41082 3300988 ~ 3301219 (-) True G488627
TU560510 lncRNA downstream 126598 3215451 ~ 3215703 (-) True G488540
TU560504 lncRNA downstream 130677 3211391 ~ 3211624 (-) True G488534
TU560477 lncRNA downstream 156307 3165332 ~ 3185994 (-) True G488507
TU560353 lncRNA downstream 288571 2981344 ~ 3053730 (-) True G488392
TU560516 lncRNA upstream 101693 3465312 ~ 3473302 (-) False G488543
TU560515 lncRNA upstream 107310 3470929 ~ 3473302 (-) True G488543
TU560629 lncRNA upstream 150846 3514465 ~ 3514967 (-) True G488643
TU560631 lncRNA upstream 153886 3517505 ~ 3517756 (-) True G488645
TU560635 lncRNA upstream 157753 3521372 ~ 3521596 (-) True G488649
CI01000340_02936853_02939837.mRNA mRNA downstream 402464 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_02567081_02567521.mRNA mRNA downstream 774658 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 993824 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 1004772 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 1010301 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_03379959_03401892.mRNA mRNA upstream 15667 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 39604 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 42855 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
CI01000340_03474617_03478517.mRNA mRNA upstream 110341 3473960 ~ 3478517 (-) True CI01000340_03474617_03478517
CI01000340_03500913_03512175.mRNA mRNA upstream 136712 3500331 ~ 3512695 (-) True CI01000340_03500913_03512175
TU559770 other downstream 1440029 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2550892 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 3016585 325334 ~ 325716 (-) False G485786
TU557450 other downstream 3016638 325334 ~ 325663 (-) True G485786
TU557403 other downstream 3260206 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 642186 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1143577 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1236601 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 1957134 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2819671 6183290 ~ 6220642 (-) True G489516

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063918 True 1981 mRNA 0.47 12 NC_007117.7 28946041 ~ 28961660 (-)
bowfin (Amia calva) AMCG00014273 True 1800 mRNA 0.61 12 CM030128.1 7445016 ~ 7455956 (+)