RNA id: CI01000340_04384950_04386594.mRNA


Basic Information

Item Value
RNA id CI01000340_04384950_04386594.mRNA
length 1481
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000340_04384950_04386594
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4384810 ~ 4386594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGGTGTTCATTCATCACTGTCATCACAAGCTCCCAAGTCTTCTGTCCAGGACTCTCTTCAAAGCATCAAAGAAAAGCCACATCAACTGTACCATCCACACTTCTCCCTCAGTCTCTGCCGTTTCCAAACCAGTCATTCCACCACCGCTTGTGTCTCGCCTCTTCCTGCCGTCCAACCTCCGGGAAGGTCAGGAGGGCGGAGACTTGACATGCCGTAGCCAGAGACTGATGCTGCAGACAGGACTTATCCATCCCTCCAACCCTGGCTGCTTCTATTACTTACCAGTCGCTCTGCGGTCCATGGAGAAGCTGGTTCGTCTCATCGATGAGGAGATGTGGGCAATCGGTGGGCAGAAAGTTGACATGCCGGCACTGTGCAGTGCAGAACTTTGGAAGAAGAGCGGCCGCTGGGAGCTAATGGGGAAAGAGATGTTCAGGCTACTGGATCGGCACAATGTAACACGCAAATTCCGTGATGAACAGAAGCCGAAATTTGGACTCTTACGTGGCCGGGAATTCTACATGAAAGACATGTATTCATTTGACATTAATGAAGAGGCGGCTCTTCATACATACCACTCTGTGTGTCAAGCTTATGGACGGATATTTGACCGACTGGGCTTGAAGTGGGTGCAGGTACAGGCTGCAACTGGCAACATAGGAGGCACACTTTCCCATGAGTTTCAGCTGCCAGCAGACATTGGCGAAGATCAGTTACTTGTTTGTGGAAACTGTGGCTTCTCTGCCAACATCGAAACCATGGAACCAGGGCAGACTGAGTGTTCACTGTGTCAAACAGGCACACTGACTGAATCCAAAGGCATCGAAGTGGGGCACACTTTTTACCTCGGCACAAAATATTCACAGGTGTTTAAGGCCCTGTTTGTTAATGCATCCAATGTGCCTGCAGTTGCAGAGATGGGCTGTTTTGGACTTGGTGTCACACGGATACTTGCCGCTTCTATAGAGGTGATGTCATCTGAGGATGCTATTCACTGGCCTGGGTTGATCGCTCCTTATCAAGTGTGTGTCCTGCCACCTAAAAAGGGCAGTAAAGCACAGGAAGTCACATCCATGGCTGATGAACTGGCTCAAAGCTTGGGAAACAGTCTGCCCAACTTGAGAGGAGAGGTGGTACTGGATGACAGGATTCAGATGACCATTGGTAAACGACTGAAGGATGCTAAAATTCTCGGGTATCCATATGTGGTGGTGGTAGGGCAGAAAGCTCTAGAGGATCTTCCCATATTTGAGGTGATTTGTCAGCAGAGTGGAGAGACAATGTTCCTTAGTAAAGAAGGGCTAGTGGATCTTTTAAGTAAAGTTGAAACTATCTAATCTAATAATGTTTTATAGCATTTTTTGTACATTTTACAGGCTAAGTGGTGTTCAAGAGAGTTCAAACATTGCTTGTGTAAGTAATGACAGTGTGTGATGTGAAAATGCCTGTGATGTGATAAGAAAATATTGGTAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01881 PARS, proS; prolyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560826 lncRNA downstream 114323 4270218 ~ 4270487 (-) True G488829
TU560823 lncRNA downstream 116938 4267656 ~ 4267872 (-) True G488826
TU560552 lncRNA downstream 226288 4125363 ~ 4158522 (-) True G488573
TU560787 lncRNA downstream 311355 4073118 ~ 4073455 (-) True G488797
TU560785 lncRNA downstream 350431 4034146 ~ 4034379 (-) True G488795
TU560886 lncRNA upstream 301420 4688014 ~ 4693632 (-) True G488888
TU560947 lncRNA upstream 330986 4717580 ~ 4717841 (-) True G488948
TU560949 lncRNA upstream 335247 4721841 ~ 4722055 (-) True G488950
TU560950 lncRNA upstream 336254 4722848 ~ 4723114 (-) True G488951
TU560953 lncRNA upstream 341092 4727686 ~ 4728165 (-) True G488954
CI01000340_04381260_04383972.mRNA mRNA downstream 838 4381084 ~ 4383972 (-) True CI01000340_04381260_04383972
CI01000340_04362537_04371224.mRNA mRNA downstream 13586 4362375 ~ 4371224 (-) True CI01000340_04362537_04371224
CI01000340_04277249_04284722.mRNA mRNA downstream 99403 4277139 ~ 4285407 (-) True CI01000340_04277249_04284722
CI01000340_04086574_04090310.mRNA mRNA downstream 294500 4086230 ~ 4090310 (-) True CI01000340_04086574_04090310
CI01000340_03750211_03772917.mRNA mRNA downstream 610894 3749935 ~ 3773916 (-) True CI01000340_03750211_03772917
CI01000340_04403305_04410695.mRNA mRNA upstream 16562 4403156 ~ 4410695 (-) True CI01000340_04403305_04410695
CI01000340_04491232_04534682.mRNA mRNA upstream 104014 4490608 ~ 4534682 (-) False CI01000340_04491232_04534682
CI01000340_04586637_04588967.mRNA mRNA upstream 199785 4586379 ~ 4589363 (-) False CI01000340_04586637_04588967
CI01000340_04598932_04627160.mRNA mRNA upstream 212120 4598714 ~ 4627447 (-) False CI01000340_04598932_04627160
CI01000340_04685622_04711254.mRNA mRNA upstream 298856 4685450 ~ 4711254 (-) True CI01000340_04685622_04711254
TU560772 other downstream 378362 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 2482538 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3593401 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 4059094 325334 ~ 325716 (-) False G485786
TU560860 other upstream 120602 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 213626 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 934159 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 1796696 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 1933863 6320457 ~ 6327372 (-) True G489511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063958 True 1711 mRNA 0.46 3 NC_007117.7 30684696 ~ 30689126 (-)