RNA id: CI01000340_07948302_07952600.mRNA


Basic Information

Item Value
RNA id CI01000340_07948302_07952600.mRNA
length 1577
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000340_07948302_07952600
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7947428 ~ 7952706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAAAAAATCAATTTAACTGTGTGCACCACTGAAGCGTCTCGCTATTGTTTGAAAGTGTCTGAGGTGGCCTGTTTATTGTGTGTATGAATGTTAAATAATGTTTATAATGTCTTCAGACCTAACCAGTTTTATCTTTGTAATATCTAAGGTGTGGAAATGTCAACTTTGCTAGAAGAACGAGCTGTAACAGATGTGGCAGAGGTAAGTGAGTTATACTTCCGTGTATAGTCATTACGTTTTGTATATTAGATGTGTCACAAGGAGTATCAATACACTGTGTTTAAAGGCTTACAGTTCTTTCTTAAAGGCTTAGTTCACTCAAAAATTCAAATTCGGTCATGAATTACTCACCCTTATGTTGTTCCAAATCCATAAGACTTCTGTTCATATTTGCAACACACATGAAGTTATTTTTAATGAAATCTGAGAGATTTCAGTTCCTCCATTTAAAGTCTATTCATCCTAAACTTTGACGGTTCAAAAAATTCATAAAGAGATTGTAAAAGTAATCCAAAATCAATGTTTATGTGTGAATAAAAGTCTTAATAAAATCTCTTTGTAATCATGTCTCTTCAGAAGACTTGGATTAAATTGCTTACTTCATATTAATTTATTGATCTCCTTTATAAACATTATGAACTGTCAAAGTTTTGGGTGAGTAGACTTTCAATGGAGGGACATAAATCTTTGATTTCATTAAAAGTATCTTAATTGGTGTTTCAGAAATGAATGAAAGTCTGGTTTTGGAATGACATGAGATTGAGTAATTGATAACAGATTTGTCATTTTTGGGAGAACTATCAATTTAATATGATTAGTCCACACTAATTAGTGAATACTCTTTAAACAGAAAAGACAACTGAAGCAAAGATGATGAAAGCAGGGGGAACAGAGATTGGAAAGACCCTCGCTGAGAAGAGCAGAGGTCTCTTCAGTGCAAACGACTGGCAGTGCAAAACGTGTGGCAATGTAAACTGGGCCAGAAGATCAGAGTGCAACATGTGTAACACTCCTAAATATGCCAAACTGGAGGAAAGGACAGGATACGGTGGAGGATTCAACGAGAGAGAGAATTTAGTCTACAATGAGCGAGAGGAATCTGATGGCGAGTACGATGAGATCCCGGTCCAGGAGCTCATCCAGTTCCCGATCGCGATCTCGCTCTCGCTCCAGGTCCAAATCCAGGCAATTAGAGCTTCAAGTTGTTCTGAAACTCTTGACGGGTTCAGCTTTGTTCTTTTGAAAAGTTCAGCTGATCCAGCTCCAGATCAGGAAAGGGCTCTGCTTCCTCAAAGAAGAGGTCTCGCTCGCCTTCATCATCGCCTGAGGGAGGCCAGAAGAGGAGTCGTTCCAGGTCCTCCTCTGCGGGCCGCAAAAAAAGACGCGCACGATCGCACTCGTCTGAAAGGCGCAGAGGCTCATCCGGATCATCCCACTCTGGCTCAAGCTCAAAACAGAAATGATTAACAAAAGAAACAAATCTTTCTAAAACTGCATGTTGTTTTTTTCCAACTCCAGTTTTTTTGTGCTATTGCAACAACCCAACTGTTTGAATTCACATTGATTTCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562626 lncRNA upstream 23638 7920863 ~ 7923790 (+) True CI01000340_07920331_07924545
TU562614 lncRNA upstream 76268 7859276 ~ 7871160 (+) True G490455
TU562625 lncRNA upstream 124399 7747670 ~ 7823029 (+) True G490466
TU562641 lncRNA upstream 203834 7743380 ~ 7743594 (+) True G490482
TU562607 lncRNA upstream 214617 7732018 ~ 7732811 (+) True G490448
TU562624 lncRNA downstream 6966 7959672 ~ 7962143 (+) True G490465
TU562666 lncRNA downstream 95909 8048615 ~ 8048994 (+) True G490502
TU562596 lncRNA downstream 97181 8049887 ~ 8051962 (+) True G490437
TU562667 lncRNA downstream 99380 8052086 ~ 8053101 (+) True G490503
TU562601 lncRNA downstream 103479 8056185 ~ 8065521 (+) True G490442
CI01000340_07929169_07934135.mRNA mRNA upstream 13009 7928482 ~ 7934419 (+) True CI01000340_07929169_07934135
CI01000340_07920331_07924545.mRNA mRNA upstream 22883 7920331 ~ 7924545 (+) False CI01000340_07920331_07924545
CI01000340_07794457_07834047.mRNA mRNA upstream 111702 7793768 ~ 7835726 (+) True CI01000340_07794457_07834047
CI01000340_07752737_07754368.mRNA mRNA upstream 192131 7752737 ~ 7755297 (+) True CI01000340_07752737_07754368
CI01000340_07721395_07728614.mRNA mRNA upstream 218676 7721395 ~ 7728752 (+) True CI01000340_07721395_07728614
CI01000340_07954531_07957240.mRNA mRNA downstream 1825 7954531 ~ 7957308 (+) True CI01000340_07954531_07957240
CI01000340_08017397_08018781.mRNA mRNA downstream 64644 8017350 ~ 8019004 (+) True CI01000340_08017397_08018781
CI01000340_08024828_08028479.mRNA mRNA downstream 72122 8024828 ~ 8028608 (+) True CI01000340_08024828_08028479
CI01000340_08076352_08117930.mRNA mRNA downstream 123646 8076352 ~ 8119164 (+) True CI01000340_08076352_08117930
CI01000340_08127948_08139978.mRNA mRNA downstream 175242 8127948 ~ 8141062 (+) True CI01000340_08127948_08139978
TU561697 other upstream 1246640 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 3282243 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3545932 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 3964883 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 5015628 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 1086106 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1172478 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1282267 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 1878767 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 2698977 10651683 ~ 10652694 (+) True G492194

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062864 True 770 lncRNA 0.39 3 NC_007117.7 37305338 ~ 37306771 (+)
tiger barb (Puntius tetrazona) TU157828 True 217 lncRNA 0.37 1 NC_056713.1 15219383 ~ 15219599 (+)
mexican tetra (Astyanax mexicanus) TU157828 True 1382 lncRNA 0.39 7 NC_035909.1 38506781 ~ 38511435 (+)