RNA id: CI01000340_08076352_08117930.mRNA


Basic Information

Item Value
RNA id CI01000340_08076352_08117930.mRNA
length 3634
RNA type mRNA
GC content 0.47
exon number 17
gene id CI01000340_08076352_08117930
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8076352 ~ 8119164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGGCGGTCACAGCACCAAAGCCATGGACATTATATGCATTAGGACACAGATCACGGTTTCCTATTTTAATGTTCATTTTAAGCCAATGTTATCGGATAAGAGCAGATGACGGCGGCATGGAGGAACTTGCCACGGAGAAAGAGGCAGAGGAAAGTCACAGGCAGGACAGCGTGAATTTACTTACATTTATTTTGCTTTTGACACTCACTATCCTCACAATATGGCTCTTCAAACACAGAAGAGTGCGCTTCCTGCACGAAACCGGACTGGCTATGATATACGGTCTGTTGGTGGGAGTTATTTTGCGGTATGGCATTCCCTCCACCAGCTACCATAATAAAACTCCTCCGAGTTGCACCCTGAAGGAAGGTCCTGTCAGCACGGTGCTCCTCAACGTTAGCGGAAAGTTCTTTGAGTACACTCTCAAGGGGGAGATCAACCTTAGAGAAATCCACAGTGTGGAGCAGAACGACATGTTGCGCAAGGTGACCTTTGACCCAGAGGTGTTCTTCAACATTCTGCTACCTCCCATCATATTCCATGCCGGATATAGCCTCAAAAAGATTGTGCTGAGTGAGCAGGGAGGCCCTGAGGAAGTGAGAGGAACTGGCTTCTGCCAGCTGTGTGTGTTTGAGACAGAAGCACAAGGCATTGTTTCCTCTCTTTGTTACACATTTGACTTTTTTGATGATCCTTACAGAATGGAGGAAAAAAACCTCATGTATGGGGTGGTGAAACTGATGCATGTTTTCGGTCAACTCACTGACAAGTTCTACTACACAGACTGCCTCTTTTTCGGTGCCATCATATCTGCCACAGATCCAGTCACAGTGCTTGCGATCTTTAATGAGCTCCATGCTGATGGTGATCTCTATGCACTGCTGTTCGGAGAGAGTGTCATGAACGACGCAGTCTCCATAGTGCTTTCATCGTCAATTGTGGCGTATCAGCCTGCAGGAGTCAACACACACACATTTGATGCCTCTGCCTTCTTCAAATCGGTGGGTGTCTTCTTGGGCATCTTCAGTGGCTCTTTCGCCATGGGAGCAGTCACTGGAGTAGTCACTGCCCTCATATCCTTTTGCATGACGGCTCTGTTCTTCCTCATGTCTTGGAGTACTTTTCTACTGGCTGAAGCATGTGGATTCACAGGTGTTGTCGCTGTGCTGTTTTGTGGAATCACACAGGCTCATTATACCTACAACAATCTCTCGGAGGAGTCGACCAAACGTACTAAACAGTTGTTTGAAGTGCTGCACTTCCTGGCAGAGAACTTCATCTTCTCGTACATGGGCCTGGCACTCTTCACCTTCCAGAATCACGTCTTCAGCCCCATTTTCATTGTTGGAGCCTTTATAGCCATCTTTATCGGCCGGGCCTTGAACATCTACCCCTTGTCTTTCCTGATTAACCTTGGCCGAAGACACAAAATCAGTGGAAACTTTCAGCACATGATGATGTTTGCAGGGCTGCGAGGGGCAATGGCATTCGCTCTGGCGATCCGCGACACCGCCACATACGCGCGACAGATGATGTTCACCACAACCCTGCTCATTGTGTTCTTCACAGTTTGGGTGTTTGGAGGAGGCACCACGCCAATGCTGTCCTGGCTACATATCAGGGTTGGAGAGTCTTCTGCTGCCGAGAAGGAGAGGCTGCGTAGACTGAGGAATTACATCAGTACATCTGCAACTGCATACAGGTCGACAACGAGAGCTGCTCTGACCGTCTTACAGGAAGGATATGTTCAGCATCCACCATGTATATATATGCTTTCCGCAGCCGTGTGCAGACTGTGTAGAATGTGGATGGAACCCAGTCAGAAGGGCAGAGCAAGACCAAGCAGGAAAGCGCCTGGCTCTTTAGACTTTGGTATACTTTTGACCACAAGTATCCTTTCAGCATGCTATTCACAACAACACACACGTACACGCTTTTGTGGTCCTGTCATTAAGAACTCGAGCACGGCTGAGCATTACTTCTTGCATTCACCGTTCTATTCTCTGCTCTTCAGTGAGCCTAGGCATTACCTGAAGCCTATCCTGACCCATAGCGGCCCCCCCCTGACCTCCACCCTGCCGGCCTGCTGCGGTCCGCTGGCTCGATGTCTGACCAGCCCCCAGGCCTATGAGAACCACGAGCCACTGCGAGACAGTGACTCAGACCTCATCCTGAACGAAGGAGACCTGACACTGACCTACGGCGACACGGCCATCACGGCCAACGGAGCCTCGTCCTCCTCCGGCCCCGAAGGATCAGCCGGGAGCTGGGGCTTGAACGGCAAACGCAGCGACAGCACATCGGAAGACGCTCTGGAACGAGAACTGGATACACGTGAACATGAGCTTTTGAGCCGTGGCACACGTTTAGTTTTCCCCATCGAGGACCACGCTTGACCCCGCCCCCAAACCTTAAATCACGCCTCCCTGTGCTTCATACCTTAACTTTTCTTGCACATAACTCCATCTGACCATTCATGACCCCTCCAAAGATTTCATGCAGTGGGTCTGAAAAATCAAAGAAACAGAAAGATGGAGAGCAGGAGGGTTTGCGCTCGGGATGTATTTACCAGAATGGAGGTGGCGTAATTGATGATATGGCTGACTTTGTGATTCATTGTCTCCTCATGAAAATGTGACTTGTAGGAGGAAAAAGAATATAAAACTGCTGTTAAGAATGCATTTCGAATAGCTTTGGACACTAAATGTCCTTATTGCTGTTTTATATGATAATGGACTGACGCAGAACGGTCTCTGCTGCCCTTAACATTCACTTTCATATGATCACCACCTGCCACATATTAACATTTTAAGTCATTAATTCTTTGTTTTCTGTTAGAAATGCTGCCACAAACTAGAAATAAGATCGACATATATGACTGAGCCAGTTTTTCTTGAAGGGAAGTCAGTTTTTACATATAAACAGCCAGTATTACATTAGATGATCTTTTTTTTTGCATTAAAATGCTCACCTCTACCATCATGCAAATGAGTGAGCAGATCATAATGTTTGTAAATACTGCAGGCCATACATTGTTTGACATGAGTGCATGTTTATCTCATGACTGCATATGGGAACCTTGTAATACTCAACTTTAGTCAGTTGGAGTTTACATTTTCTGCAATATCTTGGTTGTATGAAAGCCAGGTTTACATGCTGGTTGTTGTTAATATGAATGTTGATCTGCACAGACGTGGGACTTTTTTCATTTTTAACAGCTGGATGCAACCAGAGTGTATGAGCCATGCACTTTAGCTGCAGCTGAGCTGCAGTCCTTGCATGTATTGCTGTATTATATTAGAATATTAACCACTTGCACACTCTCAGACAGAATTTATGCGACGAGGGATGATGTAATCATCAAGGAGACTTCATATAAGAATCAAAGAGTTCACGTGTGTGGCGTTCATTTTGCGCCTCCTCACGTTAGAATGTTCTTGTACGTGGATCTTTACATTATGTATGAGTTGCTATATGGCAGTCGGCGATTCTGAAATTAGGAATCTGTAATGTTCGGCATGATGTTGACCCAGCTGTCTGTTCATACAGTATACGGATGGCCCCGTGCCATCAACCGCGAACGTGCATTCCTTCTATCCTCCGTGTCTAGAAATGAATTCTTGTTAATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K12041 SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562601 lncRNA upstream 10831 8056185 ~ 8065521 (+) True G490442
TU562667 lncRNA upstream 23251 8052086 ~ 8053101 (+) True G490503
TU562596 lncRNA upstream 24390 8049887 ~ 8051962 (+) True G490437
TU562666 lncRNA upstream 27358 8048615 ~ 8048994 (+) True G490502
TU562624 lncRNA upstream 114209 7959672 ~ 7962143 (+) True G490465
TU562630 lncRNA downstream 66907 8186071 ~ 8186347 (+) True G490471
TU562744 lncRNA downstream 239079 8358243 ~ 8358505 (+) True G490574
TU562745 lncRNA downstream 240304 8359468 ~ 8359761 (+) True G490575
TU562867 lncRNA downstream 521383 8640547 ~ 8641475 (+) True G490693
TU562901 lncRNA downstream 673807 8792971 ~ 8793223 (+) True G490720
CI01000340_08024828_08028479.mRNA mRNA upstream 47744 8024828 ~ 8028608 (+) True CI01000340_08024828_08028479
CI01000340_08017397_08018781.mRNA mRNA upstream 57348 8017350 ~ 8019004 (+) True CI01000340_08017397_08018781
CI01000340_07954531_07957240.mRNA mRNA upstream 119044 7954531 ~ 7957308 (+) True CI01000340_07954531_07957240
CI01000340_07948302_07952600.mRNA mRNA upstream 123646 7947428 ~ 7952706 (+) True CI01000340_07948302_07952600
CI01000340_07929169_07934135.mRNA mRNA upstream 141933 7928482 ~ 7934419 (+) True CI01000340_07929169_07934135
CI01000340_08127948_08139978.mRNA mRNA downstream 8784 8127948 ~ 8141062 (+) True CI01000340_08127948_08139978
CI01000340_08150345_08170718.mRNA mRNA downstream 31181 8150345 ~ 8170846 (+) True CI01000340_08150345_08170718
CI01000340_08175512_08182712.mRNA mRNA downstream 56087 8175251 ~ 8183269 (+) True CI01000340_08175512_08182712
CI01000340_08204216_08250869.mRNA mRNA downstream 85052 8204216 ~ 8251570 (+) True CI01000340_08204216_08250869
CI01000340_08259928_08321896.mRNA mRNA downstream 140764 8259928 ~ 8321896 (+) True CI01000340_08259928_08321896
TU561697 other upstream 1375564 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 3411167 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3674856 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 4093807 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 5144552 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 919648 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1006020 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1115809 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 1712309 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 2532519 10651683 ~ 10652694 (+) True G492194

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062870 False 4108 mRNA 0.46 17 NC_007117.7 37529383 ~ 37600648 (+)
bowfin (Amia calva) AMCG00021351 True 4574 mRNA 0.48 16 CM030130.1 15407884 ~ 15426650 (-)