RNA id: CI01000340_08127948_08139978.mRNA


Basic Information

Item Value
RNA id CI01000340_08127948_08139978.mRNA
length 4096
RNA type mRNA
GC content 0.44
exon number 22
gene id CI01000340_08127948_08139978
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8127948 ~ 8141062 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTCACTGGAGCAGGTTTGAGAAGGAGCTGGAGCTGGAGACCCGAAGGCTCATCTCACATTTTACTGCCATCCAGGATGAGGAAGATCAAAACTTTCAAATGGCTCTGAAGTTTACTTGGTCCAATTTCAAGATTCATGAGAAACTCATGGTCCACTCTGACTTAAGTAAAGCAGAGAGCTGGATACGGCTAACTGAAGAATTTCTCAGTTCTCCTCTTCCCAGTACTGAGGGAACCAAGACTGATGCCCACTACAGTATGCTGGCTTTATTACTCCATCTGTCTGACTCTCCATCCAACACAAACTACTGCGAAAGACCCAGATTGAAAGAAACGGAGAAAGAAGACAAGTTTGATTGGGCAAAATACCTCATGGAAGGAGAAGATATTGATACTGGGCCCTTTCCAGACACTCCAGACTGGTCTGAGGAAGAGAGTGAAGAAGAAGATAGCCAGCAGCCCCTGAGCAGAGAGGATTCTGGTATACAGGTAGACAGAACACCACAGGAGGACCACGAGCAGAATGACAAGACGGTTCAAGTCACCTGGACTGTGGGTGAGCCGGACTCCAGGGCTTGGTTGGAGCAGCATATTGTCACTTCATATTGGGTTCCCAACTCTCCCCGCTTTCCACACAGCCTCCACCTGCACTCCAACCTTTACAACGTCTGGGATCAGCACCTGTATAACACTGGGCCTCTCTACCTGCCTGAGGAGAAGTCTTTTGTTACAGAGACACAAGTGATTCGGGAAACTCTTTGGCTCTTCTCTGGTGTAAAAAAACTTTTCATTTTCCAGCACAATGATGGCAAGGTGACTGTAAGGAATGATGTGGTGGTCACTCATCTAACTAATAACTGTCTTCACTCTGTACTGGAGCACATAGCGGCCTATGGGCAGGCTGTTTCCCGTCTGCAAAAGTTTATTGATGAAGTGACCGGCCACAGTGCAGAGCCCTGTCCTCCAGGTCTTAACTCTTCCTCCTCATCCTCCAAGAAGAGCTCTGAGCCTCCCTTCCGAACCTACCAAGCATTCGTGTGGGCCCTGTATAAATACTTCACCAGCTTTAAAGAAGAGCTCAATATTATCGAAAAAGACATTATTGCCAAAGGTTGTTTTTTCTGTGTCTATGAGACGGTGACTCTGTCATCTGTGCTGGAACGGTTAAGTCCTCATCTGGCTCAGATCACGATGCTGCACAGGGTTTTCTGCACAGGAGTGGCTGAAGTGCCGACGGAAACACCCAACGTTTTGCGAGCCTCACACTTACTCAACACCCTTTACAAGGCAATCATAGAATATGACAGCGTGGGCGAGGCCTCTGAGCAGTCTGTGGCACTTCTTTTCTCTCTCTGGGTAGAAACGGTCCGGCCATACCTTGAGATTGTAGATGAATGGATTGTTCACGGTCACTTATTTGACCCCGCCAAAGAGTTTATCATTCAGAGGAACAAGGATGTACCAGTAAACCACAGGGACTTCTGGTATGCCACTTACACGCTGTATAGCGTCTCTGAGACAGTGGAGAGCGAGGAGAGGCTCAGCGATGCTGCCAGTGGAAGCTCTGGCGGGGAGCAGGCATCCAGCAGCAGACAGCACACCATGGTGTCCTTCCTCAAGCCTGTACTCAAGCAGATCATCATGGCTGGCAAATCCATGCAGCTGCTGAAAAACCTGGACTGCAAGGAGACCGAACAGCCAGATGGCTCCTCCAGAGATGCCGAAAGAAAGAGTCTGTACACGCTTTTCTTGGAGTCAGTGCAGACACGTCTTCGGTATGGAGAAGAATCACCTACGAATATGGTTACCGAGCAACAGGCCACTAAGAAGAGCCTGATCAAGATGCAGTCCATTGTAGCACGTCATCTGGAGCTGGATGACATCCATGACCCCCTGCTGGCCATTAATTTTGCAAGGCTTTATTTAGAGCAGAATGACTTCCATGAGAAATTCTCGGGCGGCAGTGTAATTTTGGACCGCTCCTCCGAGTCTGTGACATGTCAGACGTTTGAGCTTACGCTCCGTTCCTGTCTGTATCCACATATTGAGAGGAGATACATCGAATGCTGTGGGAACCTCATGAGAACCCTGAAGAAAGACTACAGGCTTCTGGGGTACTTGCAGGCCATGAGAAACTACTTCCTGTTGGAGGCTGGAGATACTATGTATGATTTCTACACAGCCATCTTTGACAAAGTTCTGGAGAAGGAGAGCTGGCAGCAGCTGGCATTCCTCAATGTGCAGCTGCAAGAGGCTGTTGGACAGCGCCACCCAGAGGACAGCAGCCGGTTGTCCATATTTCTTGAAACTATTGATCCTGCAAGAAAAAAACAGCCAGTGAATAACCTTGATGGTCTTACTCTGAGTTATAAGGTTCCATGGCCTGTAGATATTGTTATTAGTTCAGAGTGTCAGAAAATCTACAATCAGGTCTTCCTACTGTTGCTTCAGATCAAATGGGCCAAATATAGTCTGGACACATTACGATTCAGTGATTTGACAGTGGCCGCTAAGAGGCAAGAAGGAGGTCAATCTGAGGAAAGCACAGCCAAAGAGCCCATAAACCAGCAGATTCACAGGATGTTTCTCCTGAGGGTCAAACTCATGCACTTTGTCAACAGCCTGCACAACTACATTATGACTAGGATCCTACATAGTACAGGTCTAGAATTTCAACACCAAGTACAGGAGGCAAAGGACCTGGACCAGCTCATTAAAATCCACTACAGATACTTGTCCACCATTCATGACCGATGTCTGCTCAGAGAGAAAGTCAGTTTTGTCAAGGAGGCCATCATGAAAGTGCTGAATTTAGTTCTTATCTTCTCAGACAGATGGCAGGCTGGTTTTGGGGCATGGAAAATCGAGTCGATTGACAAAATGGAGTCTGATTTTAAAAACTGTCACATGTTTCTTGTGACCATTTTGAACAAGGCTGTGTGCAGAGGCTCATTTCCTCATTTGGAGTCCTTGGCGCTGTCGCTAATGGCTGGATTTGAACAGTGTTAACAGATTGAACATGGTTCCAATCCAGAGCATTGAATGAACACAAGACACATTATTTATTGTACTGCTGCATGACGGCTGCTGTACTGTTCTTGTTTGTCTGTACAAGGATATCTGACATCATAGCACATGAGACAGACACTTCATAGCACTTCATTGGTAAAGAAGTAGCACTTTGTGTCTGTAAACAGTGAAACTTAAGTGTTAACTTACAGTGTTAAATTGTCTACTTTGTCTACAGCACATTTGCTGCATCAAGATACATAATGTAATGTTTTGTGGACATTCTAGCTGTTTGTTTTTCAGCATTGTTGGCCAGTGTTGCGACTCAATATGTCAGATGTAAAACTTAATTTTTCTCTACATGCAGCGGATATGTGAAATTCTGTACATAGTATGAGCTAACAATGAAAATTGTAGAGTACATTTGTATGCAGTTTAAGCCTAAATTTGTAAATTTGTTTTGTGGTTGCTTAAAGCTGTTTTTCATTGTGCTGAATGGATTGCATATATTAAAATAATTGCCCTGGCTTTGTGATACAGTATAATGTTGCATTATACTTTTTTTCATATACGCTGCCATTCAAAAGTTTTGGGTTTGTTTTAGAAGGAAATAATGTTTATTCTTTAAAAAGACTTTAGTTACAATTTTACAATGAACTTTCTGTTTATCAAAAAATCCTGATTAAAAATGTATCATGCTTTCCACAAAAATATCAAGTAGCACATCTGTTTTCAACATTGATAACATGAAACGTTTCTTGAGCAACAGGTCAGCATATTAAAATGTTTAAAGGATTATGTGACACTTAGGACTGGAGTAATGGCTGCAAAAAACAATATTGCATAAAATTCACAATATTAATAAGTCACAGTCACTATTGATCAAATTAATGTAGCCTTCTGACTTTTTTTCAGTAACGTTAAAACATTTTGTGACCCCAAACTTTTGAACTGTAGTGTATACGCATCTCACACTTCAGGTAACTCTACCTTTAAAGTCTGTCACAGTAATAAGAACAACAAAAGCTTCATTGGCTCGATATTATAATATTGCTTATAGCACTGAAATACACAATACAGGAAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562601 lncRNA upstream 62427 8056185 ~ 8065521 (+) True G490442
TU562667 lncRNA upstream 74847 8052086 ~ 8053101 (+) True G490503
TU562596 lncRNA upstream 75986 8049887 ~ 8051962 (+) True G490437
TU562666 lncRNA upstream 78954 8048615 ~ 8048994 (+) True G490502
TU562624 lncRNA upstream 165805 7959672 ~ 7962143 (+) True G490465
TU562630 lncRNA downstream 45009 8186071 ~ 8186347 (+) True G490471
TU562744 lncRNA downstream 217181 8358243 ~ 8358505 (+) True G490574
TU562745 lncRNA downstream 218406 8359468 ~ 8359761 (+) True G490575
TU562867 lncRNA downstream 499485 8640547 ~ 8641475 (+) True G490693
TU562901 lncRNA downstream 651909 8792971 ~ 8793223 (+) True G490720
CI01000340_08076352_08117930.mRNA mRNA upstream 8784 8076352 ~ 8119164 (+) True CI01000340_08076352_08117930
CI01000340_08024828_08028479.mRNA mRNA upstream 99340 8024828 ~ 8028608 (+) True CI01000340_08024828_08028479
CI01000340_08017397_08018781.mRNA mRNA upstream 108944 8017350 ~ 8019004 (+) True CI01000340_08017397_08018781
CI01000340_07954531_07957240.mRNA mRNA upstream 170640 7954531 ~ 7957308 (+) True CI01000340_07954531_07957240
CI01000340_07948302_07952600.mRNA mRNA upstream 175242 7947428 ~ 7952706 (+) True CI01000340_07948302_07952600
CI01000340_08150345_08170718.mRNA mRNA downstream 9283 8150345 ~ 8170846 (+) True CI01000340_08150345_08170718
CI01000340_08175512_08182712.mRNA mRNA downstream 34189 8175251 ~ 8183269 (+) True CI01000340_08175512_08182712
CI01000340_08204216_08250869.mRNA mRNA downstream 63154 8204216 ~ 8251570 (+) True CI01000340_08204216_08250869
CI01000340_08259928_08321896.mRNA mRNA downstream 118866 8259928 ~ 8321896 (+) True CI01000340_08259928_08321896
CI01000340_08531898_08544235.mRNA mRNA downstream 390099 8531161 ~ 8545545 (+) True CI01000340_08531898_08544235
TU561697 other upstream 1427160 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 3462763 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3726452 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 4145403 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 5196148 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 897750 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 984122 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1093911 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 1690411 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 2510621 10651683 ~ 10652694 (+) True G492194

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062874 True 4128 mRNA 0.43 23 NC_007117.7 37625787 ~ 37652517 (+)
rainbow trout (Oncorhynchus mykiss) TU1003353 True 1288 lncRNA 0.36 1 NC_048574.1 34417974 ~ 34419261 (-)
bowfin (Amia calva) AMCG00016098 True 3013 mRNA 0.43 6 CM030122.1 7102201 ~ 7110849 (+)