RNA id: TCONS_00022087


Basic Information

Item Value
RNA id TCONS_00022087
length 698
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id XLOC_010414
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5746308 ~ 5786042 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGACATGAACGTTGCTGAGAGCTTCACACTCCTTCCACTGGCTTTTCATCATCACACTGCATCCTGGTTCCATCAGTTTCTcacaaaacaagcacacacacgggCATCGAAATTAGACCAGGAAACCTTCTTCCACTGTcaaaattcacattttaaaaccTTCTATGGTAGACTTTCAGCTGCActaaaaataaagtcatttgcATGGTAAGAAAGATTTCAAAAGATACACCTTTTTGTTTCTTTCACTGTGTAAATCTTTaaggtacactttcaaaaagATGTTTCATTTTTCACGTAGCAATAGTACAATTTAGAACCGGCATGTCCTGAAGAGagtttacgtttttttttttcccgcctttttgttttcaaatcagCAACTGACAAAACAAAGGTACCACTGGTTTCTCTGCTCAACTACACGGTTAGCTCGACTATCGGCACTCTTTCAACAGAACATGTGTGGCCATCTTAGGTCATTTGATGATGCCTCTCCTTCGCCGGATGCGAGCAGTCTGAGAAAAGCTCTTGAGGAGATAAGAACAGATCAAAGTGACAAGGAGCCGACAGAACCCAAGCAAAATGGCAGTTCGTGAGAATGTCCACCGAGCCCTTGAGTGCTCTCCAATCTGCCGAGATGGAAAAAGGAGAAGAACGTCATCAAAAGTCAGaatttctaggcgcagccttggg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022086 lncRNA downstream 102570 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00022085 lncRNA downstream 157688 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022084 lncRNA downstream 157742 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00022083 lncRNA downstream 572865 5169775 ~ 5173443 (-) True XLOC_010408
TCONS_00022082 lncRNA downstream 574144 5169775 ~ 5172164 (-) False XLOC_010408
TCONS_00021780 lncRNA upstream 397133 6183175 ~ 6188967 (-) False XLOC_010417
TCONS_00022089 lncRNA upstream 461981 6248023 ~ 6249246 (-) True XLOC_010418
TCONS_00022091 lncRNA upstream 505131 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022090 lncRNA upstream 505131 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022093 lncRNA upstream 505131 6291173 ~ 6351690 (-) False XLOC_010419
TCONS_00020469 mRNA downstream 24922 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020468 mRNA downstream 74446 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020467 mRNA downstream 133828 5607138 ~ 5612480 (-) True XLOC_010410
TCONS_00020464 mRNA downstream 592276 5145132 ~ 5154032 (-) False XLOC_010407
TCONS_00020465 mRNA downstream 592284 5145580 ~ 5154024 (-) False XLOC_010407
TCONS_00020470 mRNA upstream 728 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA upstream 14538 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020474 mRNA upstream 396459 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020475 mRNA upstream 397443 6183485 ~ 6198543 (-) True XLOC_010417
TCONS_00020476 mRNA upstream 570418 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020459 other downstream 638891 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 684679 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1026923 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020445 other downstream 1126543 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020438 other downstream 1218661 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020472 other upstream 35255 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020473 other upstream 84531 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020493 other upstream 1042510 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 1433950 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1907839 7693881 ~ 7696211 (-) False XLOC_010438

Expression Profile

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