RNA id: TCONS_00001627


Basic Information

Item Value
RNA id TCONS_00001627
length 230
lncRNA type lincRNA
GC content 0.42
exon number 2
gene id XLOC_001023
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9308271 ~ 9321931 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTTTAGCGTTTCATGCGACTGTATGTAATTGACCTAATATGTGTTTAAATTACAAGAGACAGGACTTTGGATCAAATCAGCGCAGCATCCATCAGGACAATCAGTTTCACCGCCTTGCCAGTCCACTACCCACAATTCCAGTGCTGCACTGGGACTTTCCTGATGAAAGAATGTGAGTATGCGGTTGTCTATTAAGATATGTAAATTTGTAATCTCTCAAAGCCCGCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194788

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001614 lncRNA downstream 151871 9157310 ~ 9162637 (-) True XLOC_001016
TCONS_00003339 lncRNA downstream 175348 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00003338 lncRNA downstream 231736 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00003337 lncRNA downstream 333837 8978905 ~ 8980671 (-) False XLOC_001009
TCONS_00001604 lncRNA downstream 336545 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003340 lncRNA upstream 98893 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00003341 lncRNA upstream 594445 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00001651 lncRNA upstream 650765 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA upstream 657363 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00001676 lncRNA upstream 1349921 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001625 mRNA downstream 36471 9273208 ~ 9278037 (-) True XLOC_001022
TCONS_00001623 mRNA downstream 36522 9258931 ~ 9277986 (-) False XLOC_001022
TCONS_00001624 mRNA downstream 36522 9270015 ~ 9277986 (-) False XLOC_001022
TCONS_00001622 mRNA downstream 64565 9234928 ~ 9249943 (-) True XLOC_001021
TCONS_00001621 mRNA downstream 82556 9230244 ~ 9231952 (-) True XLOC_001020
TCONS_00001628 mRNA upstream 137829 9459760 ~ 9486214 (-) False XLOC_001025
TCONS_00001630 mRNA upstream 147979 9469910 ~ 9485939 (-) True XLOC_001025
TCONS_00001631 mRNA upstream 177714 9499645 ~ 9527200 (-) True XLOC_001026
TCONS_00001632 mRNA upstream 304346 9626277 ~ 9629705 (-) False XLOC_001027
TCONS_00001633 mRNA upstream 305309 9627240 ~ 9629724 (-) True XLOC_001027
TCONS_00001617 other downstream 116542 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001610 other downstream 195837 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001595 other downstream 661853 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 761210 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 1338739 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001629 other upstream 138079 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 418871 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 741570 10063501 ~ 10064568 (-) False XLOC_001036
TCONS_00001657 other upstream 741943 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001660 other upstream 744300 10066231 ~ 10071422 (-) False XLOC_001036