Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU560193 |
| length | 4909 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G488259 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 2658651 ~ 2751966 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU560182 | lncRNA | downstream | 78987 | 2648354 ~ 2654655 (-) | True | G488251 |
| TU560177 | lncRNA | downstream | 99825 | 2633573 ~ 2633817 (-) | True | G488247 |
| TU560132 | lncRNA | downstream | 175175 | 2554516 ~ 2558467 (-) | False | G488207 |
| TU560133 | lncRNA | downstream | 175175 | 2554516 ~ 2558467 (-) | True | G488207 |
| TU560123 | lncRNA | downstream | 214083 | 2518832 ~ 2519559 (-) | True | G488201 |
| TU560250 | lncRNA | upstream | 15202 | 2767168 ~ 2773417 (-) | True | G488306 |
| TU560247 | lncRNA | upstream | 26612 | 2778578 ~ 2780461 (-) | True | G488303 |
| TU560243 | lncRNA | upstream | 29547 | 2781513 ~ 2783739 (-) | True | G488302 |
| TU560248 | lncRNA | upstream | 33701 | 2785667 ~ 2786091 (-) | True | G488304 |
| TU560274 | lncRNA | upstream | 54047 | 2806013 ~ 2806242 (-) | True | G488325 |
| CI01000340_02567081_02567521.mRNA | mRNA | downstream | 165999 | 2566737 ~ 2567643 (-) | True | CI01000340_02567081_02567521 |
| CI01000340_02341068_02348409.mRNA | mRNA | downstream | 385165 | 2340503 ~ 2348477 (-) | True | CI01000340_02341068_02348409 |
| CI01000340_02333476_02337529.mRNA | mRNA | downstream | 396113 | 2333102 ~ 2337529 (-) | True | CI01000340_02333476_02337529 |
| CI01000340_02329631_02332000.mRNA | mRNA | downstream | 401642 | 2329606 ~ 2332000 (-) | True | CI01000340_02329631_02332000 |
| CI01000340_02293072_02301920.mRNA | mRNA | downstream | 430695 | 2293014 ~ 2302947 (-) | True | CI01000340_02293072_02301920 |
| CI01000340_02936853_02939837.mRNA | mRNA | upstream | 183671 | 2935637 ~ 2939837 (-) | True | CI01000340_02936853_02939837 |
| CI01000340_03342324_03363204.mRNA | mRNA | upstream | 590335 | 3342301 ~ 3363619 (-) | True | CI01000340_03342324_03363204 |
| CI01000340_03379959_03401892.mRNA | mRNA | upstream | 627320 | 3379286 ~ 3401952 (-) | True | CI01000340_03379959_03401892 |
| CI01000340_03403238_03403692.mRNA | mRNA | upstream | 651257 | 3403223 ~ 3403692 (-) | True | CI01000340_03403238_03403692 |
| CI01000340_03406706_03449487.mRNA | mRNA | upstream | 654508 | 3406474 ~ 3449487 (-) | True | CI01000340_03406706_03449487 |
| TU559770 | other | downstream | 831370 | 1895801 ~ 1902272 (-) | True | G487884 |
| TU557495 | other | downstream | 1942233 | 786551 ~ 791409 (-) | True | CI01000340_00787534_00791061 |
| TU557449 | other | downstream | 2407926 | 325334 ~ 325716 (-) | False | G485786 |
| TU557450 | other | downstream | 2407979 | 325334 ~ 325663 (-) | True | G485786 |
| TU557403 | other | downstream | 2651547 | 79415 ~ 82095 (-) | True | CI01000340_00062787_00080635 |
| TU560772 | other | upstream | 1253839 | 4005805 ~ 4006448 (-) | True | G488782 |
| TU560860 | other | upstream | 1755230 | 4507196 ~ 4518120 (-) | True | G488862 |
| TU560885 | other | upstream | 1848254 | 4658632 ~ 4659061 (-) | True | G488887 |
| TU561021 | other | upstream | 2568787 | 5320753 ~ 5325144 (-) | True | CI01000340_05321995_05329778 |
| TU561569 | other | upstream | 3431324 | 6183290 ~ 6220642 (-) | True | G489516 |
