RNA id: TU562745


Basic Information

Item Value
RNA id TU562745
length 294
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G490575
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8359468 ~ 8359761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGGCCGAGCACCTTCTTTGAGCAATCTGCTATTGATGCGCATGCTTTTGTTTTGTGTTTTCATGAGTAACCTTTAAAAACATTGAAATTTAACTCACTTTAAAGAATTTAAATGCTATTCACTTTGATTCACTGTAAAAAAAAAAAAAAAAAAAAAAATCCGTTAAATTTACGGTAAAAAAAGCGGTAGCTGTGGTTGCCAGAAATTTACAGTAAAAAAAAAAAAAAAAAAAACGGTAGCAGCGTTTTAAAGGGTTAGTGCACCCAAAAAATGAAAATAATGTCATTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562744 lncRNA upstream 963 8358243 ~ 8358505 (+) True G490574
TU562630 lncRNA upstream 173121 8186071 ~ 8186347 (+) True G490471
TU562601 lncRNA upstream 293947 8056185 ~ 8065521 (+) True G490442
TU562667 lncRNA upstream 306367 8052086 ~ 8053101 (+) True G490503
TU562596 lncRNA upstream 307506 8049887 ~ 8051962 (+) True G490437
TU562867 lncRNA downstream 280786 8640547 ~ 8641475 (+) True G490693
TU562901 lncRNA downstream 433210 8792971 ~ 8793223 (+) True G490720
TU562902 lncRNA downstream 433649 8793410 ~ 8793894 (+) False G490721
TU562905 lncRNA downstream 433758 8793519 ~ 8793894 (+) False G490721
TU562903 lncRNA downstream 433784 8793545 ~ 8793894 (+) True G490721
CI01000340_08259928_08321896.mRNA mRNA upstream 37572 8259928 ~ 8321896 (+) True CI01000340_08259928_08321896
CI01000340_08204216_08250869.mRNA mRNA upstream 107898 8204216 ~ 8251570 (+) True CI01000340_08204216_08250869
CI01000340_08175512_08182712.mRNA mRNA upstream 176199 8175251 ~ 8183269 (+) True CI01000340_08175512_08182712
CI01000340_08150345_08170718.mRNA mRNA upstream 188622 8150345 ~ 8170846 (+) True CI01000340_08150345_08170718
CI01000340_08127948_08139978.mRNA mRNA upstream 218406 8127948 ~ 8141062 (+) True CI01000340_08127948_08139978
CI01000340_08531898_08544235.mRNA mRNA downstream 171400 8531161 ~ 8545545 (+) True CI01000340_08531898_08544235
CI01000340_08547042_08577482.mRNA mRNA downstream 187138 8546899 ~ 8577918 (+) True CI01000340_08547042_08577482
CI01000340_08632493_08682360.mRNA mRNA downstream 272612 8632373 ~ 8682405 (+) True CI01000340_08632493_08682360
CI01000340_08710260_08719614.mRNA mRNA downstream 350499 8710260 ~ 8720007 (+) True CI01000340_08710260_08719614
CI01000340_08746450_08751542.mRNA mRNA downstream 385558 8745319 ~ 8751598 (+) True CI01000340_08746450_08751542
TU561697 other upstream 1658680 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 3694283 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3957972 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 4376923 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 5427668 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 679051 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 765423 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 875212 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 1471712 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 2291922 10651683 ~ 10652694 (+) True G492194

Expression Profile