RNA id: TU563018


Basic Information

Item Value
RNA id TU563018
length 476
RNA type TUCP
GC content 0.50
exon number 2
gene id G490826
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9125184 ~ 9131397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATGATATGGGCTCAAAGTTCACTCACTTTCTTGTTCATATAGTAGGGGTCCAAGTCCTCCAGGGGCACCGCCAGCATTTTGGAGGGGACGTCCCCATAAATAAAGGGCACGCTCTTCCCCGCTTCCAGGTCAGTGTTGGGCTTCGGTTTGTTGTCATCATCGTCATCACGGTGACTGCTGTCAGATCTGGGCTTAACAGGCTTCTTTTTCTTTTCCTCAGCGATGCGCTTCTCGATGTTGGCCAAAGACTCTGGGGTAAACTTCTTGAAGCTATCGGGGCCTGGAGGTGCAAGCAGCTGCGCAGCCATATTGTCATCCTGCAGCAGAGTCCTCTTTATTTAGAAGCCATTCAGGACAGCCAGCTTTTTTCCGCATTAAGAGCGATCCATGTAGATCTTGCGTGCCTAAGGATGTTTAAAAGACCCAGGAGAAACTGCGGATGTCGCCATATTGTTGCCGCTATCTTCCTTCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563013 lncRNA upstream 5919 9118609 ~ 9119265 (+) True G490823
TU562984 lncRNA upstream 73038 9052002 ~ 9052146 (+) True G490800
TU562822 lncRNA upstream 108632 8991150 ~ 9016552 (+) True G490648
TU562946 lncRNA upstream 214914 8909939 ~ 8910270 (+) True G490762
TU562943 lncRNA upstream 223401 8901571 ~ 8901783 (+) True G490759
TU563022 lncRNA downstream 32769 9164166 ~ 9164806 (+) True G490829
TU562996 lncRNA downstream 46447 9177844 ~ 9218507 (+) True G490808
TU563045 lncRNA downstream 92104 9223501 ~ 9223806 (+) True G490845
TU563169 lncRNA downstream 202200 9333597 ~ 9336674 (+) True G490950
TU563084 lncRNA downstream 263304 9394701 ~ 9401693 (+) True G490878
CI01000340_09064514_09065350.mRNA mRNA upstream 58661 9064171 ~ 9066523 (+) True CI01000340_09064514_09065350
CI01000340_09053887_09057663.mRNA mRNA upstream 67521 9053887 ~ 9057663 (+) True CI01000340_09053887_09057663
CI01000340_08999872_09005509.mRNA mRNA upstream 119200 8999438 ~ 9005984 (+) True CI01000340_08999872_09005509
CI01000340_08970483_08982079.mRNA mRNA upstream 141773 8970442 ~ 8983411 (+) True CI01000340_08970483_08982079
CI01000340_08938200_08942073.mRNA mRNA upstream 182560 8938152 ~ 8942624 (+) True CI01000340_08938200_08942073
CI01000340_09133213_09134688.mRNA mRNA downstream 1085 9132482 ~ 9134688 (+) True CI01000340_09133213_09134688
CI01000340_09137611_09140263.mRNA mRNA downstream 5313 9136710 ~ 9140263 (+) True CI01000340_09137611_09140263
CI01000340_09293326_09302243.mRNA mRNA downstream 161787 9293184 ~ 9302415 (+) True CI01000340_09293326_09302243
CI01000340_09305181_09322207.mRNA mRNA downstream 173784 9305181 ~ 9322390 (+) True CI01000340_09305181_09322207
CI01000340_09339973_09344291.mRNA mRNA downstream 208514 9339911 ~ 9344393 (+) True CI01000340_09339973_09344291
TU562819 other upstream 82083 9038812 ~ 9043101 (+) True G490645
TU561697 other upstream 2424396 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 4459999 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 4723688 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 5142639 3973915 ~ 3982545 (+) True G487133
TU563038 other downstream 103576 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 700076 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 1520286 10651683 ~ 10652694 (+) True G492194
TU564649 other downstream 1652005 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other downstream 1652259 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861

Expression Profile