Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020508 |
| length | 7688 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_010439 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 7742658 ~ 7793457 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0072089 | stem cell proliferation | biological_process |
| GO:2000177 | regulation of neural precursor cell proliferation | biological_process |
| GO:0035278 | miRNA mediated inhibition of translation | biological_process |
| GO:0000082 | G1/S transition of mitotic cell cycle | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0031047 | gene silencing by RNA | biological_process |
| GO:0010172 | embryonic body morphogenesis | biological_process |
| GO:0060964 | regulation of gene silencing by miRNA | biological_process |
| GO:0017148 | negative regulation of translation | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0021915 | neural tube development | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0010586 | miRNA metabolic process | biological_process |
| GO:0000932 | P-body | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0035198 | miRNA binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| GO:0030371 | translation repressor activity | molecular_function |
| id | description |
|---|---|
| ko04361 | Axon regeneration |
| ko05206 | MicroRNAs in cancer |
| ko03019 | Messenger RNA biogenesis |
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-040128-1 | Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71). |
| ensembl_id | ENSDART00000113483 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022110 | lncRNA | downstream | 121543 | 7551271 ~ 7621115 (-) | False | XLOC_010436 |
| TCONS_00022109 | lncRNA | downstream | 121543 | 7551271 ~ 7621115 (-) | False | XLOC_010436 |
| TCONS_00022111 | lncRNA | downstream | 121543 | 7572119 ~ 7621115 (-) | False | XLOC_010436 |
| TCONS_00020504 | lncRNA | downstream | 121544 | 7551271 ~ 7621114 (-) | False | XLOC_010436 |
| TCONS_00022112 | lncRNA | downstream | 121553 | 7598373 ~ 7621105 (-) | False | XLOC_010436 |
| TCONS_00022114 | lncRNA | upstream | 40762 | 7834219 ~ 7881277 (-) | False | XLOC_010441 |
| TCONS_00020513 | lncRNA | upstream | 63043 | 7856500 ~ 7881252 (-) | True | XLOC_010441 |
| TCONS_00020514 | lncRNA | upstream | 174563 | 7968020 ~ 7973937 (-) | False | XLOC_010442 |
| TCONS_00021784 | lncRNA | upstream | 174567 | 7968024 ~ 7983783 (-) | False | XLOC_010442 |
| TCONS_00020515 | lncRNA | upstream | 174764 | 7968221 ~ 7984901 (-) | True | XLOC_010442 |
| TCONS_00020505 | mRNA | downstream | 50090 | 7688368 ~ 7692568 (-) | True | XLOC_010437 |
| TCONS_00020503 | mRNA | downstream | 299270 | 7430998 ~ 7443388 (-) | True | XLOC_010435 |
| TCONS_00020502 | mRNA | downstream | 363330 | 7376471 ~ 7379328 (-) | True | XLOC_010434 |
| TCONS_00020501 | mRNA | downstream | 379852 | 7315144 ~ 7362806 (-) | True | XLOC_010433 |
| TCONS_00020499 | mRNA | downstream | 503201 | 7217448 ~ 7239457 (-) | False | XLOC_010432 |
| TCONS_00020509 | mRNA | upstream | 9273 | 7802730 ~ 7828848 (-) | False | XLOC_010440 |
| TCONS_00020510 | mRNA | upstream | 12007 | 7805464 ~ 7827365 (-) | False | XLOC_010440 |
| TCONS_00020511 | mRNA | upstream | 12007 | 7805464 ~ 7827517 (-) | False | XLOC_010440 |
| TCONS_00020512 | mRNA | upstream | 12007 | 7805464 ~ 7828838 (-) | True | XLOC_010440 |
| TCONS_00020516 | mRNA | upstream | 254439 | 8047896 ~ 8120203 (-) | False | XLOC_010443 |
| TCONS_00020507 | other | downstream | 46442 | 7694794 ~ 7696216 (-) | True | XLOC_010438 |
| TCONS_00020506 | other | downstream | 46447 | 7693881 ~ 7696211 (-) | False | XLOC_010438 |
| TCONS_00020500 | other | downstream | 514379 | 7219992 ~ 7228279 (-) | True | XLOC_010432 |
| TCONS_00020493 | other | downstream | 913023 | 6828552 ~ 6829635 (-) | True | XLOC_010430 |
| TCONS_00020473 | other | downstream | 1871969 | 5870573 ~ 5870689 (-) | True | XLOC_010416 |
| TCONS_00020521 | other | upstream | 494314 | 8287771 ~ 8288447 (-) | True | XLOC_010447 |
| TCONS_00020525 | other | upstream | 578808 | 8372265 ~ 8395559 (-) | True | XLOC_010449 |
| TCONS_00020526 | other | upstream | 685423 | 8478880 ~ 8479009 (-) | True | XLOC_010450 |
| TCONS_00020535 | other | upstream | 1508622 | 9302079 ~ 9302194 (-) | True | XLOC_010455 |
| TCONS_00020559 | other | upstream | 2461750 | 10255207 ~ 10261625 (-) | True | XLOC_010469 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000016_10600154_10633808.mRNA | True | 3758 | mRNA | 0.49 | 5 | CI01000016 | 10599202 ~ 10633808 (-) |
| bowfin (Amia calva) | AMCG00002536 | True | 1755 | mRNA | 0.56 | 3 | CM030136.1 | 18172131 ~ 18182627 (-) |
