RNA id: TCONS_00020514


Basic Information

Item Value
RNA id TCONS_00020514
length 529
lncRNA type lincRNA
GC content 0.44
exon number 3
gene id XLOC_010442
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7968020 ~ 7984901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACAACAGAGTCACAGAATACATCTACCATCTTAATGTCCAAAGTCCAAGtggTGAAACAGCCTTTAAAAACATGACCATTCCATATGGCTGGGCAAAGAGGCCCATGCTGCAGAGAATTGGCCTGATTCACGACGACATCCCCATTACCGTGATCTATGGCTCACGCTCCAGCATAGATGGCCACTCCGGCAATTCAATCAAAGAAATGAGGCCAAACTCCCATGTCGAGATCATTGTCATACGAGGTGCCGGACACTATGTTTATGCTGACCAGCCTGAGGATTTCAACCAGAAGATACTTCATGTCTGTGATACAATAAGCTGAATAGGGATGAAggtatatttttcttctggaactATCCAAACAGAGCTTATGGTGTCTCCACATTGGCTCATGCATGTCAACACATGATCTTCGTTGCATATGAAATTTGGACTGGAGATTTGGGAAGCCACTGGGTTTGAAAACCACATGTTTTGCACCACTACTGGACTTTTTTGaagcatttgtgtttgtgtgtgtgtg

Function

GO:

id name namespace
GO:0015677 copper ion import biological_process
GO:0008823 cupric reductase activity molecular_function
GO:0052851 ferric-chelate reductase (NADPH) activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163721

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022114 lncRNA downstream 86743 7834219 ~ 7881277 (-) False XLOC_010441
TCONS_00020513 lncRNA downstream 86768 7856500 ~ 7881252 (-) True XLOC_010441
TCONS_00022110 lncRNA downstream 346905 7551271 ~ 7621115 (-) False XLOC_010436
TCONS_00022109 lncRNA downstream 346905 7551271 ~ 7621115 (-) False XLOC_010436
TCONS_00022111 lncRNA downstream 346905 7572119 ~ 7621115 (-) False XLOC_010436
TCONS_00021785 lncRNA upstream 166775 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020523 lncRNA upstream 326887 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022115 lncRNA upstream 577852 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022116 lncRNA upstream 695044 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 1467084 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020509 mRNA downstream 139172 7802730 ~ 7828848 (-) False XLOC_010440
TCONS_00020512 mRNA downstream 139182 7805464 ~ 7828838 (-) True XLOC_010440
TCONS_00020511 mRNA downstream 140503 7805464 ~ 7827517 (-) False XLOC_010440
TCONS_00020510 mRNA downstream 140655 7805464 ~ 7827365 (-) False XLOC_010440
TCONS_00020508 mRNA downstream 174563 7742658 ~ 7793457 (-) True XLOC_010439
TCONS_00020516 mRNA upstream 73959 8047896 ~ 8120203 (-) False XLOC_010443
TCONS_00020517 mRNA upstream 77324 8051261 ~ 8132742 (-) True XLOC_010443
TCONS_00020518 mRNA upstream 214251 8188188 ~ 8217495 (-) False XLOC_010445
TCONS_00020519 mRNA upstream 214251 8188188 ~ 8251985 (-) True XLOC_010445
TCONS_00020520 mRNA upstream 284266 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020507 other downstream 271804 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 271809 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020500 other downstream 739741 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 1138385 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 2097331 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020521 other upstream 313834 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020525 other upstream 398328 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 504943 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020535 other upstream 1328142 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 2281270 10255207 ~ 10261625 (-) True XLOC_010469

Expression Profile

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