RNA id: TCONS_00021785


Basic Information

Item Value
RNA id TCONS_00021785
length 755
lncRNA type intronic
GC content 0.27
exon number 3
gene id XLOC_010444
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8140712 ~ 8142312 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTTTAACTGGAAATACAAAATCTAAATACAACAAAATGACATTATACTTTACAAATTATGTATCATATATGGAAGGCGAGGCTCAACACAATATTAAGTCAAGAAAAAGAGTACACAAAAGACAAAAAGATAAGTACAAAGAGTGTAAAGTTACAAAAATAGTCCAAActaaaattttacaaaacaacaaaacagatACTGGCTATAGCAAGTTTTataatagaaataaattaaacattttttaaggcATTTCATTTCAGCCAGGCAATCCGAAaaagtttttaattcttttaaaaaagacaatGAGTAGTAgagaatttttgaaaaatcggcatttataaataaaatatttggctaATACAATGCTATTTTTTATCAAACCGTGAAAAACAGAGCAATCTTTAGTAGTTCCATATAGTAAATCTTGTAATGTGAAAGTCAAACCTTCAGCAACCACCTACTTTATTATCATCCAGTCTTgcactattttccaaaacgaatgaGCAAAACCGCAAGTAAAAATATGTGTTCTGTGTCTTCAATTAAGTGTTTGCATAAATAGCATgggggctaataattcattaatatttctgacttcaactgtatttttatagggtatatataattaaatatttaaaattgtatttatttagctttGGGGGGAATTGAAAATTTAAGATTGTAAATGCCGTTCTAAAATGTTTAACAGTATTTTTATCCAATGTATGATATAATTTATGTATTAATACTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020515 lncRNA downstream 155811 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00021784 lncRNA downstream 156929 7968024 ~ 7983783 (-) False XLOC_010442
TCONS_00020514 lncRNA downstream 166775 7968020 ~ 7973937 (-) False XLOC_010442
TCONS_00022114 lncRNA downstream 259435 7834219 ~ 7881277 (-) False XLOC_010441
TCONS_00020513 lncRNA downstream 259460 7856500 ~ 7881252 (-) True XLOC_010441
TCONS_00020523 lncRNA upstream 158512 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022115 lncRNA upstream 409477 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022116 lncRNA upstream 526669 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 1298709 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020541 lncRNA upstream 1422191 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020517 mRNA downstream 7970 8051261 ~ 8132742 (-) True XLOC_010443
TCONS_00020516 mRNA downstream 20509 8047896 ~ 8120203 (-) False XLOC_010443
TCONS_00020509 mRNA downstream 311864 7802730 ~ 7828848 (-) False XLOC_010440
TCONS_00020512 mRNA downstream 311874 7805464 ~ 7828838 (-) True XLOC_010440
TCONS_00020511 mRNA downstream 313195 7805464 ~ 7827517 (-) False XLOC_010440
TCONS_00020518 mRNA upstream 45876 8188188 ~ 8217495 (-) False XLOC_010445
TCONS_00020519 mRNA upstream 45876 8188188 ~ 8251985 (-) True XLOC_010445
TCONS_00020520 mRNA upstream 115891 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020522 mRNA upstream 156230 8298542 ~ 8342749 (-) False XLOC_010448
TCONS_00020524 mRNA upstream 221773 8364085 ~ 8520474 (-) False XLOC_010449
TCONS_00020507 other downstream 444496 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 444501 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020500 other downstream 912433 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 1311077 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 2270023 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020521 other upstream 145459 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020525 other upstream 229953 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 336568 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020535 other upstream 1159767 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 2112895 10255207 ~ 10261625 (-) True XLOC_010469