RNA id: TCONS_00020521


Basic Information

Item Value
RNA id TCONS_00020521
length 280
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_010447
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8287771 ~ 8288447 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGATATTTTGACAGTGCAGATCACcttgtatatatattatactttgCGTTATAGCCACTgaaacttcaaaacatttagatATGGTCTTATAGCCCAGTCACAACGTGCAGCTACAGGTCCTCACTGAGCTCCTTTcagattccgtctggccctagccaTGACTTTCCCCAAACCAACAGCAGAGAGCTTTTGTTTTTCACCTGTTGAGTTGATTAAAACAGCAGTTCCAAATGAATCAGGGTAATTAGGAGGCTTTGAAACAGCTTGGACTATTTGTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171688

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021785 lncRNA downstream 145459 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020515 lncRNA downstream 302870 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00021784 lncRNA downstream 303988 7968024 ~ 7983783 (-) False XLOC_010442
TCONS_00020514 lncRNA downstream 313834 7968020 ~ 7973937 (-) False XLOC_010442
TCONS_00022114 lncRNA downstream 406494 7834219 ~ 7881277 (-) False XLOC_010441
TCONS_00020523 lncRNA upstream 12377 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022115 lncRNA upstream 263342 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022116 lncRNA upstream 380534 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 1152574 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020541 lncRNA upstream 1276056 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020520 mRNA downstream 6886 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020519 mRNA downstream 35786 8188188 ~ 8251985 (-) True XLOC_010445
TCONS_00020518 mRNA downstream 70276 8188188 ~ 8217495 (-) False XLOC_010445
TCONS_00020517 mRNA downstream 155029 8051261 ~ 8132742 (-) True XLOC_010443
TCONS_00020516 mRNA downstream 167568 8047896 ~ 8120203 (-) False XLOC_010443
TCONS_00020522 mRNA upstream 10095 8298542 ~ 8342749 (-) False XLOC_010448
TCONS_00020524 mRNA upstream 75638 8364085 ~ 8520474 (-) False XLOC_010449
TCONS_00020529 mRNA upstream 241325 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020528 mRNA upstream 241325 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020527 mRNA upstream 241325 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020507 other downstream 591555 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 591560 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020500 other downstream 1059492 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 1458136 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 2417082 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020525 other upstream 83818 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 190433 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020535 other upstream 1013632 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 1966760 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 2541362 10829809 ~ 10837232 (-) False XLOC_010476

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01096890_00003640_00004020.mRNA True 1132 mRNA 0.43 1 CI01096890 3640 ~ 4771 (+)