RNA id: TCONS_00020542


Basic Information

Item Value
RNA id TCONS_00020542
length 977
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_010459
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9672126 ~ 9675982 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGGACTGTCCAGCTTGATCAGGAATGGCAGAAACAACGAACCCAGCCGCTACTTCGTTTCCAGCACCGACTATTTCTTTGCCTCTTGGTGTGGAAATATTGAGGACGTATTCTGGAGCCCTTATTTGTTTGGAAATTGTGTTTGGAGCACTGGTGTGGATTTTAGTAGCATCGACAAACGTGTCTGTGCCACTGTTGCAGGGATGGGTGATGTTCGTGTCAGTGACCATGTTCATTTGTTCATCTGCATAccttgtcttgtttctgctgGGGTTGGCTGACAAGATTAACACCGACTGGAATTTCATAGACATGTTCTACCATTTCATCGCTTTGCTgttttattttggtgcatttttaCTGGAAGCTACAGTTTCTTCTTCTGCGGGTGTATATGGAAACACCACATGTATACAGAAACCCCGTGgcaatataataacatttatggATCATCGAGAACACAACATTAATGTTGCAGCTACGATATTTGCATTCATAGTGACTGCATGTTACGCCTGTAGCATGATCATGGGCTTCAGGAGATGGAGAAAATAGTCCACAATGGAGCATACATGACCAATTCATGAGACTAATGTCTTCAAACGTCAGCTGGTGGTCAGAGAGGACCTTTATTTTCCAGCAGTTATTGAGTTGgtgtttagatttatttttattgttaatatgttcagtatttattattatgaatatttatattaatataactttacattaattttaattatattgtttatattccTAAAATCGCCACTGAACAAATGTCAGGTGATATGTGCTGGATATATGTGTCTGTGTGGGGGAAGGGCAACTTTGGTCCTTGAGGGCCATTGACCCTTTTTACTTATCTGGGTTTCTTAGCAGTGGAAGTCAACATAGTTAAAACTCAGTGAATTGGAGAGTACAACAGATACATGTTTTGCATTCCTATTTGttcaaataataaaagtaaaaactcaA

Function

GO:

id name namespace
GO:0042552 myelination biological_process
GO:0045056 transcytosis biological_process
GO:0045121 membrane raft cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019911 structural constituent of myelin sheath molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081022-204 Predicted to be a structural constituent of myelin sheath. Predicted to be involved in myelination. Predicted to act upstream of or within transcytosis. Predicted to be located in membrane raft. Predicted to be integral component of membrane. Orthologous to human MAL2 (mal, T cell differentiation protein 2).

Ensembl:

ensembl_id ENSDART00000113724

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020541 lncRNA downstream 105755 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 230123 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 992664 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00022115 lncRNA downstream 1107025 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00020523 lncRNA downstream 1368947 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022117 lncRNA upstream 83194 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00022118 lncRNA upstream 337003 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00020554 lncRNA upstream 388944 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020557 lncRNA upstream 529128 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 745188 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00020538 mRNA downstream 218535 9433738 ~ 9453591 (-) False XLOC_010457
TCONS_00020540 mRNA downstream 222414 9446920 ~ 9449712 (-) True XLOC_010457
TCONS_00020536 mRNA downstream 246675 9421002 ~ 9425451 (-) False XLOC_010456
TCONS_00020537 mRNA downstream 248391 9422411 ~ 9423735 (-) True XLOC_010456
TCONS_00020534 mRNA downstream 288497 9275689 ~ 9383629 (-) False XLOC_010454
TCONS_00020543 mRNA upstream 4926 9680908 ~ 9694822 (-) True XLOC_010460
TCONS_00020544 mRNA upstream 111401 9787383 ~ 9802998 (-) False XLOC_010462
TCONS_00020545 mRNA upstream 117886 9793868 ~ 9802449 (-) True XLOC_010462
TCONS_00020546 mRNA upstream 131281 9807263 ~ 9830451 (-) True XLOC_010463
TCONS_00020547 mRNA upstream 157274 9833256 ~ 9897613 (-) False XLOC_010464
TCONS_00020535 other downstream 369932 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1193117 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1276567 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1383679 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 1975910 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 579225 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 1153827 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 1240308 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 2084937 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 2336092 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000233_00038176_00041967.mRNA True 459 mRNA 0.47 3 CI01000233 38176 ~ 41967 (-)