RNA id: TCONS_00020552


Basic Information

Item Value
RNA id TCONS_00020552
length 2533
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_010467
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10025896 ~ 10053049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGTTGAAGGAGGAGGCGTCTAGATAACACCCAGCATTAGAACAATAAGGATATGGTAGATCTCGTCATCAATCGTGGGCATCAAGCGTATTGTAATAGACTTGTAGTTTAGACTTAGGTGGCATTTTGACGATCGAAAACATGTCCTTGTCACCTGAAAAGGcaaatgagttaaaacaaataattcaTGACCATTTAATTAAGATGGATATCCATGGTAAAATTCGTGATGTTTTAACCGAAACAGTGCAAGGTGATGGCCACCATAAACAATGCTTGCTCTCTGAGGAGGACTTTATGCATGCACTCCAGCGGAGGGGAATTGTTAATGATGTGATGAAGGATCTTCACTTTACAAATATGTATAATTCTCATACTGAAGCTGATTCTGTGAACAAGTCTGCAACACATTTTATGGACCAGAACATCACACAGCTGAAAACAGCTAACATCGGTCAACTAAAGAGACAACTCTACCTTCAAGTTGTGGGTGGTAAAGCTTTTCTGGAACAGTTGCAGGAGCCAGAACCTTTACCTGGTCAGGTGTGCTCTACTTTCACACTTCACGTTCACTTCCGCAATCAGCGCTTCCGCTCCAAACCAATCCCATGTGCTTGTGAACCAGACATACAGGAAGGCTTTCTTCTGGAAATACACAGAGATGGCCCAGGAGATGCTAGCAAGATGGCTGATGCTACCACCATGTTGTCCATATGTGATCCAGTACATATGGTATTAATTAAAACAGACACCTCTGGGGACACAACACTGGTTTCTTCTTATTTTCTTGACTGGCGGACAGTTCTCAGTGCTCCCAATGGGAAAATCAGTGTCTCCGCAGAACTACTAGGAGTGGGTGCTGAAGCTAAAGTACCCGCTGGAGTTCTGAATCTAAAATTGGAACTGTACCCTCCCCTAACTGAGACCTTAAGCCCTGATGTCGTCACCATGCAGAAATCCTTGGAAAGACAAAAAACAGCAGAGAAGGAGAGATTGTTTTTGGTATATGCGAAACAGTGGTGGCAGGAGTTCTTGGACATTCGACCGTCAAACAAATCCAAACTCGTGAAGATTTTTGCACAGgatgaAAATGGTGTGAACAGACCTGTGTGTTCATATGTACGTGTATTGCGTGCTGGCAGATTGCTTGAAAGTCCACGGCAGGCGGCACGTTTCGTTAGTCTGTTAGCTCAGGAGAGAGCACCCGTGGTTGGAGGAGGAGTTAGGCAGGAGCAGTGGGCCTCCATGATGGTCTTTCTTTGTAGGAACAAGGGTGACTGTGAGGATCATGCTACACTACTGTGTAGTTTATTGTTGGGCTTTGGATTGGATGCTTATGTATGTGTTGGCACCAAAGTCAAAAATATTCCACACACATGGGTCATGACCTGTGGCACAGATGGCTCCATCACCTTTTGGGAAAGTTTTACTGCACACAGATACCTTCACCGTCCAATAGACCCAGATGCTCCTTCCATGATCCTCCAACCAAAACCTGTGCACCCTTACCAGAcacttggctgtgtatttaaccACAAGATATTTCTGGCAAACTGTCAGGTGTCAGATGCTGTGGAGCGGTGTGTATTTGACTTTACAGACGGCTCCCGCTGGAAGGCCATGAGTGAGGAGGCTGTTAGATCTGTATGTGACCCTGGCTTCAACGCCTCTCTCCctccaactcctcctctctgctcCTCTTCTTTAGTTCCAAATGAGGCTAGCAACCAACTTGAGCTGGAAATGCGGTACTTATTATCAGAGCATAGAAAGGATCTAGGTCTGGCAACGGTCTGGGATGATCACCTGTCATACCTGCTATCGGCTGCACTGTCAGCATATGAACTGGAGCGCTGTGCAGGTGTGTCATATGGAAATGAGGAGTTTCAGGATGCAGTAAGAAGAGCAGTGCCTGACGGACACACTTTTAAAGCCTTTCCTATCAATTTCTTGCACTGCAATGCACGCAGGGCATTTGCTACCTGCCTCAGGTCACCATTCTGTGAAGAAATTGTTTGCTGTCGAGGGGATCATGTACGACTAGCAGTGAGGGTTCGTGTGTTTGGATATCCAGAATCAGCTTGTGCTGTTTGGATCATGTTTGCTTGCAAATACAGATCAGTTCTGTAAAAAACGCAGCATGACTATTCAGATTCCATGTGTCTGCaactacatttaacatttatttgtgtCTAGTGTAATGCAAAcacacattttgtgtgtgtgtgtgtatgtatatatatatatatatatatatatatatatatatatatatatacacatgtatatatatatatatatatatatatatgtatgtatatatgtgtgtgtatatgtatgtatatatgtatgtatgtatgtatatagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaaaagaaagaaagaaagaaagaaagaaagaaaagcttttttgctGTGCTATACATGACTACAGATGGAAAAATGAATGATCAAAAAAGACaagtgaataaaaatgtgtctttagtCGTGCAATGC

Function

GO:

id name namespace
GO:0046599 regulation of centriole replication biological_process
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070820-5 Predicted to be involved in regulation of centriole replication. Predicted to be located in centriole. Orthologous to human CEP76 (centrosomal protein 76).

Ensembl:

ensembl_id ENSDART00000081152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022118 lncRNA downstream 12291 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00022117 lncRNA downstream 264143 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 459525 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 583893 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 1346434 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020554 lncRNA upstream 11877 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020557 lncRNA upstream 152061 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 368121 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 368121 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022121 lncRNA upstream 372698 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00020551 mRNA downstream 45494 9977858 ~ 9980402 (-) True XLOC_010465
TCONS_00020550 mRNA downstream 128127 9835192 ~ 9897769 (-) True XLOC_010464
TCONS_00020547 mRNA downstream 128283 9833256 ~ 9897613 (-) False XLOC_010464
TCONS_00020548 mRNA downstream 146489 9835011 ~ 9879407 (-) False XLOC_010464
TCONS_00020549 mRNA downstream 156840 9835084 ~ 9869056 (-) False XLOC_010464
TCONS_00020553 mRNA upstream 2443 10055492 ~ 10071886 (-) False XLOC_010468
TCONS_00020555 mRNA upstream 12463 10065512 ~ 10071887 (-) True XLOC_010468
TCONS_00020556 mRNA upstream 44073 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA upstream 160402 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020560 mRNA upstream 234539 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020535 other downstream 723702 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1546887 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1630337 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1737449 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 2329680 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 202158 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 776760 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 863241 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1707870 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1959025 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_09638800_09651752.mRNA True 2134 mRNA 0.50 12 CI01000016 9638592 ~ 9651752 (-)