RNA id: TCONS_00020553


Basic Information

Item Value
RNA id TCONS_00020553
length 1819
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_010468
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10055492 ~ 10071887 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGGATGCAAGCTGCCGGTAaaatcagaagaagaagaaaaagaggaaaaCATTGCGTAACACCGTTTCTCTTTGTTTTCTCCAGAGAGTTATGTCAATTTCAAACAATGGAATAGCAATAACTCATTTGATATGAGACAACAATTGATTTACCCGCTTACGTGTGAATGATCTctctttagaaaataaaaatggaCCAGGAGTTTAAGAACATCGATTCATCTGGAGAGTGGCAAAACCTTTATAATGAATTACATAATCAGTCTCAAGAGCGGTCCTACAAAGTGGCAAAGTTCCCAGAAAACTGCAATAGGAATAGATATAGAGACGTCAGTCCTTATGATCACAGTCGGGTGAAATTAGAGAATTCTGAGAACGACTACATAAATGCCAGCTTAATTACCATGGAGGAGGCTCAAAGAAGGTACATATTGACACagGGTCCCTTGAAGAACACTTGCGGTCACTTCTGGCTAATGGTTTGGGAACAGGGTTCCAAAGCAGTTATTATGCTTAACAGAGTGATAGAGAAAGGCACGGAGAAATGTGCACAGTACTGGCCGTCAAAAGAGGAGCAAGACATGAATTTCAGTGACACTGGGTTCATGGTGACTCTTGTGTGTGAGGATGTTAAACCAAATTACACAATAAGACTATTAGAACTTCAAAATGGCAAGACAGGAGAGACCAGAGATATCTACCATTTTCATTACACAGCATGGCCTGATTTTGGTGTACCAGAGTCCCCAGCATCCTTCCTTGACTTTCTTTTCAAGGTCCGTGAGTCTGGGTCATTAGGGCCTGAGAATGGACCTGTGGTGGTCCACTGCAGTGCAGGAATAGGGCGATCTGGATCTTTCTCATTGGTTGACACCTGCCTTGTCTTGatGGACCAGAGAAATGACTTTTTGGCTGTGGACATACAAAAGGTTTTGTTAGACATGAGAGAGTATCGAATGGGCCTTATTCAAACCCCGGATCAACTTCGGTTTTCATATATGGCAGTCATGGAGGGAGCTAAGCTTATTCTGGGAGACTCTACTTTACAGAGCTCGATCTTGAGTCCTGAGAATTACATTGGAGAATCTGACCGTATGGAACCACAGGATTCAGGACTAGAGCAAGAATGGAAACGATTTCCAAAGGAAGAGCAGCTTAGTGAGTTAAAAACATTCAGTCTACGAAAGAGGAGCCGCAAGGAGCGGATAGCCAACACAGCACAGCAAGTGCAGAAAATGAAGATGAAATTGAGTGAttcagagaaaaagagagaaaactgGCTGTTCTGGAGACCAATTCTACTTAATGTCGGCGCTGGCGCAGCTGTGGCATTTGGACTTTGCATATGCTGGGCCTTTTTAACCCAGTAATTGTCCCGCAGatcatttttcctgtttttattttgtccagAGACACAAATTGTTTTCATGAAAGGTGCTTGGATGCTTCTAAATAAGGACTTATTTAAGAATGTTTACAAGCATTCATACCCAGATATTCTACATGTTTTATTGAATGTTCGTGTCATGTAgttattacagtgtaatgaatGTAGTTCAACTTTTGTAATACCGTCTTGGGAAGTTTTTGAGATCTGACAGTTTTCACTGTACAGTAATCTGCCTGCAGCATGGTGTTTAAAAGTAGTCTCCACTTGGTtttgattattgtatttatttgatgcTTTTGTCTTCAAATTTCCACTTGGAATATCATAGAGTGACTCATTTGTTTGTACAGGTTAAAGCTCAGCGAGTTTCTATTCATGTTTACAATTGAGGATCTTTTAGTAATAAACTGACTGTAGATTTACCCAAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1196 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Orthologous to human PTPN2 (protein tyrosine phosphatase non-receptor type 2).

Ensembl:

ensembl_id ENSDART00000136168

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022118 lncRNA downstream 41887 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00022117 lncRNA downstream 293739 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 489121 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 613489 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 1376030 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020557 lncRNA upstream 133224 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 349284 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 349284 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022121 lncRNA upstream 353861 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00022122 lncRNA upstream 777820 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00020552 mRNA downstream 2443 10025896 ~ 10053049 (-) True XLOC_010467
TCONS_00020551 mRNA downstream 75090 9977858 ~ 9980402 (-) True XLOC_010465
TCONS_00020550 mRNA downstream 157723 9835192 ~ 9897769 (-) True XLOC_010464
TCONS_00020547 mRNA downstream 157879 9833256 ~ 9897613 (-) False XLOC_010464
TCONS_00020556 mRNA upstream 25236 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA upstream 141565 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020560 mRNA upstream 215702 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020561 mRNA upstream 325554 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020562 mRNA upstream 405647 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020535 other downstream 753298 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1576483 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1659933 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1767045 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 2359276 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 183321 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 757923 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 844404 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1689033 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1940188 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_09654611_09661197.mRNA True 2300 mRNA 0.40 8 CI01000016 9653502 ~ 9661197 (-)