RNA id: TCONS_00020561


Basic Information

Item Value
RNA id TCONS_00020561
length 1626
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_010471
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10397440 ~ 10404383 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tattCAGCCTGGCATAAATATAACACTACTCAACCCTACCTTACTTTGActgctatctctctctctttttctctctctcactaaATCCACCCCACCCCcttctttgtgtgtgtttctaaTACACACCTATCAGTCAGTTTGATTTAACCCCTCTCTCACACATGTATGAGATCTCAGAGTTCTGACTGCTTTGTTCTGACAAGCAAAACTGGAATGCACACAAATCACATGAAGGACACAAACAACAACTTTAACAACTCTCTCCTCGGCGCCCAAAAGGAGAAACTTATTCAAGcgattaaaaaaatcaaacatgaaaTTGATGAATGTTATGAAGCTGAGAAAGATGCCTTTGTGGACGCACTGGAAGTCGAGAACAGATTTGAAAAGATTGAGCGTGAAATCCGAGCAGAATTTCAAAACCTCCATCGTTTCCTGAACGAGGAGGAGGAGGCAGATGTGGAGCGACTGAAGAAGGAGAGAGACAAACGAGTGAAGATCTTAAAAGACAGAGAGAAGAAGATTGCCATGCAGGGTGGAGCTCTAGAGAAAGCCATCGAGACGCTGAACTGCAAACTGCGAGAAGACGACAGTCCCAAACTTCTGAAGgaAATCAAAGAGCTTCTCAAAAGATGTGAGGTGAATTTTGTTCGTCCTTCCCCAATCGACAGTGAAATCTTCTCGAGTCAGTTTGTGGGGCCCATTCAGTACCGGATCTGGAAACACATGAAGGCATCACTATACCCAAACATATCCATGTTGACGTTTGACCCTGAAACAGCACATCCCCTTCTGACCTTGTCTCCTGAGAGAACTGCAGTGACTTTCGAGGAGGGCAAGGAGCCTGGGGAGAATCTGGCTGAGCGGAACCCAAAGCGCTTCCACTACTATTACTGCGTAATGGGCTCAGAGGGCTTCACTCATGGCCGCCATTACTGGGAGGTGGAGGTAAAAGGCAAGACCGCCTGGAGAGTGGGTGTGGCGAGAGCAGACGTGCACCGCGGAGAGATGGACTCTTCCTCGACGCTAAACGGACTGTGGACGTTGTCTCTTAGAAATGGCTCGATCACGGCCTGCACCCACCCAAAGCCCACACCAGTGCTCTCGTACACTCCCCCAATCCGCATCGGCGTTTTCCTAGACTGTGATAATGAGGAGGTGTCTTTCTACAACGCTGTCACCATGAACCCACTCTTCTCCTTCTACACAGGGACTGTTTTAGTGCCACTCTATCCATTCTATAACCCGTGTGACACAGATGAAGGAAAGAACTGTGCTCCTCTTTCCATATTTCATCCATCACTGTGAAGGATTGGCTTGGGTGTTTGTTTCTTCAACTAACTGCTGACACAGTTTGAAATGCTGGATTTTGATCAACCGAAAGCATGAATGCCTGTGAATCTAGATTGCAGGGGTCTTATTTATGAATGTGgcatacacataaaaaaacagaaGTGGAAGCGTTCGTACGGCACTTTCACGCAAAGGTTGTAATCTATAAAAAACTAACTTGACAGAGAATGTGCGCAGGTGTAAGTAAATGTTTTTTACTTAAATACTGACTTAATTGAACCACCTTAAATCATTATATAAGCcataatcataaatatataaCTACAAATTTAT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160113-43 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000173412

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020557 lncRNA downstream 189598 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00020554 lncRNA downstream 331560 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00022118 lncRNA downstream 383835 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00022117 lncRNA downstream 635687 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 831069 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022119 lncRNA upstream 16787 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 16787 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022121 lncRNA upstream 21364 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00022122 lncRNA upstream 445323 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022123 lncRNA upstream 513201 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00020560 mRNA downstream 81081 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020556 mRNA downstream 135788 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA downstream 173699 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020555 mRNA downstream 325553 10065512 ~ 10071887 (-) True XLOC_010468
TCONS_00020553 mRNA downstream 325554 10055492 ~ 10071886 (-) False XLOC_010468
TCONS_00020562 mRNA upstream 73150 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020563 mRNA upstream 118213 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020564 mRNA upstream 424404 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA upstream 426289 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020568 mRNA upstream 822863 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020559 other downstream 135815 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 1095246 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1918431 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 2001881 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 2108993 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020565 other upstream 425426 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 511907 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1356536 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1607691 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 1835024 12239407 ~ 12239460 (-) True XLOC_010497

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_04226585_04232287.mRNA True 1254 mRNA 0.47 6 CI01000016 4226439 ~ 4232287 (-)
grasscarp (Ctenopharyngodon idella) TU440902 True 276 lncRNA 0.38 1 CI01000195 1196939 ~ 1197214 (+)
mexican tetra (Astyanax mexicanus) TU440902 True 207 lncRNA 0.45 2 NW_019172885.1 1334670 ~ 1336092 (+)