RNA id: TCONS_00022121


Basic Information

Item Value
RNA id TCONS_00022121
length 1979
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id XLOC_010473
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10425747 ~ 10428540 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttttttttttttatacaacagttctgtctggttctcgaatctgattggctgatagccgtgatatatttaagtcatatcagcacccgtacagccttttacatacaaccagcaaaaagcagacactacagatgtAAAAGATGCTTCTTCAACTGTTAACTGTCAGCTAATTACTTGAATCCAATGCGAacgaaagtagttcctcatacaaacgtttttgagactctccatgtttgattttgtatttatatacacaattatgccgtcaaactgttgtataaacgcaatatcacacgagtagcagtgcgatatggctgtacatCAGTACTATTGGGGGCACTAAGCAACacacgttatatatatatatatatattgtatgtgtgtgtgttctattatttaaatgaataattttagtttttaattgtcTTTTTAAAGCGGTTTAGTATAGTCTTCTACgtttgttttgtctgatttttaTGTACCTTTCATTTGAATTAAAGTTTTTAAAGTGGTAATAAACCCACACGGTTgactgatttgttttgtttatggctttcaattttatttcactttatatccattaaaaataaatgaggaAAGTTCTTCTGAAACCAAGGCTGCAACAAAAGTGGATAAGTGGTGTTGCGCTTTATTTGTTGTGTAATATGCAAATAAGATATAGCTAACACaaccatacacacatatattcaaATCTATTCACCAACCACTTCAGATGTCAGCAACTCAGGTGTTTGCAATTGAGATGACTCCCCTGAGCTTCCTCCAAAAGCTTCCAGAACATTGTCTACAGTATTTTCCACCACTCCACCTACGATGGACACACCAAAGTTAAGCACGTGACCCACCCCTTTACCACTTCTCCAGGTAAGTTTGCCAATCCCACTGCCTACAGTTGACACCTGGTGGCCCATTTCTGAGGATACGGCCCATAGGTAATCTACCGTGCCATCCCAGACTGACCCAAGAACAGTTCTAATGATACTAAAACCATTCCCCACTGTTCCTGTCATGATACCCACGGCATCTGAGGCCAGAGTCCCTGTTCCTATGAATCCCTCCTGGAATGCCAGCCCTAAGCTGCCAGCTAGTGGAGAGAGACAGGCGTACATGGTGCACACGCTAGTTTCTCCAGTCTGGTACAAGGTGTTCAAGATGCATGAAACTCCAGAACACACTCCCGAGCCCAGATTGTTGACCAAAGTGAAGCTGTCAACAGGCACCGAGGCCAGAACAGCCAGATCTTCCTGGAGAACATAACCCAGCTGGAAAGGAAGATTAGTGGCTATGTTTACGATTGGAGAGAATGGGGCATAAAGAAGAGAGACGATGGTGGACAAAATGTAGAGAAGAACTGATTCGGAGCGCTCAATTTCTTCGGTGTCCTCCTGAATGTTCATGTCTGAACCCAAGGAAGATTCTGAAGACTCTGAGTTCACTTCCTCATCGATTGATTCTGATGATTCTGCTTCCTGAGTGTTACGCTTGCTAATGTGTTCCTCGCTTTGTGCGTCAGAATTGGGTGTTTCAATGCTATTCATCTCCTTCTTCAAAATGGAAGCAAGTTCCTCTTCCATCTCATGTCCTATTTCACCACAGCCTCCTGAAAACAAACCTGTAACACCAATTCGCTCTTCTAGTGCTTTAATGCTGAGTACTTTCACATCCCCCTCCTTCACTAGCCCAAAACTGAAGCTACCATCTCCGCCTGAAGCAGCACAACACAGTGCTGACCACATCGGTTTCCCTCCACATTCATTAAAGCCGCCCACACCATTCTGCACATAAATTTCCCCGCCATTCTCTGAACACTTCGCTATGATGGAACTCCGGATCAACTCGGCTGTCAGAGAATCCCACTGGAGGAACGGTGAGGATGATGGAGTCTCATCTGAGGTTTCTCTGTAAAGTGCTGGGATGGCCTCATGGGAATCATCATTGATCTCTTCTTGGGCTTCCT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020557 lncRNA downstream 217905 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00020554 lncRNA downstream 359867 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00022118 lncRNA downstream 412142 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00022117 lncRNA downstream 663994 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 859376 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022122 lncRNA upstream 421166 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022123 lncRNA upstream 489044 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00022124 lncRNA upstream 551512 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00021786 lncRNA upstream 806349 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00020570 lncRNA upstream 1009329 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00020561 mRNA downstream 21364 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020560 mRNA downstream 109388 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020556 mRNA downstream 164095 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA downstream 202006 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020555 mRNA downstream 353860 10065512 ~ 10071887 (-) True XLOC_010468
TCONS_00020562 mRNA upstream 48993 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020563 mRNA upstream 94056 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020564 mRNA upstream 400247 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA upstream 402132 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020568 mRNA upstream 798706 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020559 other downstream 164122 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 1123553 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1946738 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 2030188 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 2137300 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020565 other upstream 401269 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 487750 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1332379 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1583534 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 1810867 12239407 ~ 12239460 (-) True XLOC_010497

Expression Profile

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