RNA id: TCONS_00020563


Basic Information

Item Value
RNA id TCONS_00020563
length 1624
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_010475
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10522596 ~ 10547781 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGAAAAATGATCAAGCTTTTATAATTGTTAGATTTGGTTTATGCATAATCTTCTCTCCGCTCATGGCAGGTGATGTATGGAATGACGTGGTCATGGCCCGTGAAGACACATCCGTCACCATGTCCTGCTTTAAGTCGCCACCGACCTCATCCATAATGGTCACCTGGAAGATGATGTCCGTACGGGAAGACCGCTGGTCATATTTACTCTCAGCCAACTGCattgacggacagacagacggacgcaGAAGCAGAGTGTTTGGAGGCAGAACTTTCGAGATCTCTGCAGATGCATCGCTTAACTTCATCGCTGCAGTGGCCACTCAAGGACGATACTCCTGTGTGGTGGAACAGGATGACAAGAAGTTGCAGGAGAAGATTGTTCTTCTCGCTCTGGTTAAATTATCTGTCACTCCTACGCCCCCTGTCACAGTGGACAGGACTCTGAGACTGGCAGCTCAGGTGTCTCCTGCCTCTGTGGCCGCCGGGGGAACGTGGGTGTCTCCCTCAGGCGAGTTGCTGTACACCGAGATCTCTCATGGCATGGGCCGTCTGCTCAGTAAACTGCCTCGCGTCACCAGTAAAGACAGCGGAGTCTATACCTGCAGAATCCGTGTCCATGGGAACAGCAGCACGTCTGACTCTGAGCACCGGGTGAATGTGACAGTGAATGtGAGAGCTGTGTTTTCTTTCACAGATGTGACACATGGAGAATCAAGGCCCATGGCGGTCCTCTCTCGTTCAGTGGTCACTATAACCTGTCCTTCTGTCCTTGGTGACTATGTGCTGCTTTACTGGGAGTATCCTGATTCAAAGAGAATGGAGCTCATATTCCAGTATGACCGCTGGAGGCGGAGCTACACCAACCAAACCAAACTCCACCTTCAATTTACAGGCTCCGCCTCTTTGGCTACTGCTGGGAACTTTTCCTTTTCTTTAAGCCCATCGCTCAAGGATGGAGGAGTCTACTTGTGCGAGGTCTTCCTGGATGACAAGGCTTTCAGTCAAGCCAACAAACTGAGTGTTTTGCATGGATACACCAGTTCATCCCGCAGATCACTGGATCTGAGCTGTATGTACTCAGAGAGATCTCAGGTCAAATCTGTGAGATGGTCTTATGTTCAGGATCCCAAACGCACACTCCAAACTACTGCCGTTATGGGCAAGATCACGACCTCTGTTGCACTTCCTGTGACCTCTAAGACGGCTGGACAGTACGCTTGCACTCTTTATCTGGAAAACGGCAAATCAGTTCAATATATGCACACCGTCACAAAAACAGCTCCAACAGTTTCTCCAGGCCCTGCACTGCCACCTGCAGAAGACATTTCAGTTCATTCTTATGTTTCTACCTTCTCCTTCCTGCTACTTCTGATACCCGTGATAGCTGCAGCTGTTGGGGTGTTGCTATGGAAACGGGGCTATTGCGTCACCCGCCGAAGTGTCGAGCAGTCGCTGTCGTACCACTCCGGAGAGGTGGAGAACATCTATGAAAATCCTGATGATCTGAGACAGACACCTCCCCAAGGCGCAGTCTACATGGATCTCAAGCCAACGGGTGAAATGGATGTATATAAAGAATTGGAGAGATACAACCAGTGCTGTGGTTGATTTTgttaca

Function

GO:

id name namespace
GO:0042110 T cell activation biological_process
GO:0007596 blood coagulation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0035723 interleukin-15-mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0045121 membrane raft cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:1990782 protein tyrosine kinase binding molecular_function
GO:0042289 MHC class II protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130220-1 Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Acts upstream of or within blood coagulation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and membrane raft.

Ensembl:

ensembl_id ENSDART00000166495

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022120 lncRNA downstream 92703 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022119 lncRNA downstream 92776 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022121 lncRNA downstream 94056 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00020557 lncRNA downstream 314754 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00020554 lncRNA downstream 456716 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00022122 lncRNA upstream 301925 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022123 lncRNA upstream 369803 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00022124 lncRNA upstream 432271 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00021786 lncRNA upstream 687108 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00020570 lncRNA upstream 890088 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00020562 mRNA downstream 5626 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020561 mRNA downstream 118213 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020560 mRNA downstream 206237 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020556 mRNA downstream 260944 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA downstream 298855 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020564 mRNA upstream 281006 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA upstream 282891 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020568 mRNA upstream 679465 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020569 mRNA upstream 680165 11227946 ~ 11235572 (-) False XLOC_010481
TCONS_00020571 mRNA upstream 1212821 11760602 ~ 11766265 (-) False XLOC_010484
TCONS_00020559 other downstream 260971 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 1220402 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 2043587 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 2127037 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 2234149 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020565 other upstream 282028 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 368509 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1213138 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1464293 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 1691626 12239407 ~ 12239460 (-) True XLOC_010497

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_04277441_04297655.mRNA True 3064 mRNA 0.42 12 CI01000016 4276958 ~ 4298217 (-)