RNA id: TCONS_00020564


Basic Information

Item Value
RNA id TCONS_00020564
length 2263
RNA type mRNA
GC content 0.37
exon number 6
gene id XLOC_010476
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10828787 ~ 10837245 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCATATCCGCTGCACATCAACACAGTCAACACATCTACACAAAGTGCTaCACGTCGAGATGGATGCAAAAGTAAGTGACCCCTTTAGCAGCGAGGCAGATCAGCTTCCAGGAGCAGGAATTGTGGGAAGGCTTTGGCTGCCCAAAGGTCTGTCTGGAAATGTGATTAAGGATTGGGTGGACCGCAGGCGGAAGTCCATCCGTCCGTGGGCCGGCTTTGTTGACCAGCGCAAGTTTTCCAAGCCCCGTAATTTTGGAGAGCTGTGCCAGCGTGTTGTGAGGAACCTGGACACCTATCAGAGCAACTACACCTTCATCTTCATGGCTCTCATCCTCTATTGCATTATCAGTTCTCCAATGCTTTTGATTGCTTTGGGAGTGTTTGCTGGTGCCTTCTATATAATCCACTTGAAAACGCTGGAAAAGAAGCTGGTGGTTTTTGGTCGTGAATTGACTCAGGGACACCAGTTGGGTTTGGCAGGAGGGGTTTCCTTCCCAGTCTTCTGGCTTGCAGGAGCAGGATCCGCTGTCTTCTGGGTTCTAGGTGCTACCCTGGCTGTTATCGGGTCTCATGCTGCGTTTCATGAGCTGGAGTCTCCTGACGTGGATGAGTTGCTCATGGAACCCGTTTAAACCTCTCACCTTTGACCTTTTGCCTCACGTTAACCTCAAATGTCTCCCCTCATCTTTTGTATCAGCACCTGTTGGTTGCACTAATCTAACAATATTAGTTTACTGAACGATTGGCCAGGAAAGACTGTTAAATGGACTGTTAAATGGCCCAGACAGATGAAGCACATTCAAAGACCTTTAAATGCCTTTACTGGTACCTGTTagtttgttacattttatttattttgaaatatcaaAGCACAAGGTAGTAAATGAACTAAGaccatgtaaaaaaatgcagtatAGTCAAACGTTTGAGAGATTCACTTTAAGAATGTTGTAAACTAGTAGCCACTGACATCAGTAATAGGataataaatactatggaagtctaataataataaagaataaataaactcaaacaggatTGGAGCAAAATgatagtgagtaaatgatgacagaattttcatctcTTTAAAGCAGGGCTGCCCAAACCTTTTTTTCATGAAGGGCAAAAACAAAACTTGATTGAGCGTGGTGGGCCGaagctaaatataccaaactCTATTACATTATTTGCCAGGATCACTTActaatttaacaatatttaaaaataaatagaaaaaaatctaatcatattattaataataataaaaataaaaactttttttaatactgTACTTATAATACATTAAAACCCGAcactatctctttttttttttacaaaaacgaTATAGTTTTAGCAACGTGCCACACACAAATACTATTATATAAAATGGATTTCGTGActctttaaaattttttattaattcacaacatttaatttcacttaattgttttgtagttcatcaattaaacaaacaaacataggttatgttaaattagtgatgatctctGTTGAAGACATTCGCCTCAACCTTACCCATAATTCTCCCACTCgactcagatgggatggtgggccaaatcaaaagttaccgcaggccctagtttgggcatcactgCTTTAAatgcacagttcacccaaaacataattttaaagttgaatgacttttattttgacagacTTTTCAAAGACTTTAACTGTTTTAATAGGCTATAAAGAAACTGACAAAACAAATAGCcttttttttcagtaaatgttTAACAGCAGAATGAAATAAAGTCTTATATTGGATTAATAACGTGAATAACGTAAGGGTGACTAAATAATGACTGGATTTTGACACATTTTGGGCCATGTATATTCGATATATATGGTATTTTAAATCTGCTTAATCAGCTTTTGATCAAAAGGTCATGCTAGCTCATCAGAAAGAGCATGAAAAATCAAACAACACGATTGTATTGTTTCGATGGTCAGTTTCTGTGGTATGTGGGTACCGGTTATTAcataatcattttgttttgagCTATGCTTAATTTTTCTTACATTAGCCAGTCAGCCATGCATGATTTAATAACCGCATGATAAGCAAAGATCATGTATTTCTGCTATTCAGTGTAACCTGATGCCAATATTCCCAGTGGaagcattttttttcattatacaaGTTCTCCTTTTATGCAAACATTTGcttttttgacttttattttgcagCTTGTTTCTGTTGTATTGATAAGTGGGATGTGCAATAAAATGCTTCGCCTGTA

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040625-146 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in adaxial cell; cephalic musculature; hypaxial myotome region; myotome; and pectoral fin musculature. Orthologous to human RABAC1 (Rab acceptor 1).

Ensembl:

ensembl_id ENSDART00000036891

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022120 lncRNA downstream 398894 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022119 lncRNA downstream 398967 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022121 lncRNA downstream 400247 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00020557 lncRNA downstream 620945 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00020554 lncRNA downstream 762907 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00022122 lncRNA upstream 12461 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022123 lncRNA upstream 80339 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00022124 lncRNA upstream 142807 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00021786 lncRNA upstream 397644 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00020570 lncRNA upstream 600624 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00020563 mRNA downstream 281006 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020562 mRNA downstream 311817 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020561 mRNA downstream 424404 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020560 mRNA downstream 512428 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020556 mRNA downstream 567135 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020568 mRNA upstream 390001 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020569 mRNA upstream 390701 11227946 ~ 11235572 (-) False XLOC_010481
TCONS_00020571 mRNA upstream 923357 11760602 ~ 11766265 (-) False XLOC_010484
TCONS_00020573 mRNA upstream 936150 11773395 ~ 11778933 (-) False XLOC_010484
TCONS_00020574 mRNA upstream 936601 11773846 ~ 11779661 (-) False XLOC_010484
TCONS_00020559 other downstream 567162 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 1526593 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 2349778 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 2433228 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 2540340 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020567 other upstream 79045 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 923674 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1174829 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 1402162 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 1410617 12247862 ~ 12247920 (-) True XLOC_010498

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_04422169_04424433.mRNA True 790 mRNA 0.47 5 CI01000016 4421995 ~ 4424433 (-)