Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00021786 |
| length | 1161 |
| lncRNA type | sense_over |
| GC content | 0.52 |
| exon number | 3 |
| gene id | XLOC_010481 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 11227246 ~ 11241424 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022124 | lncRNA | downstream | 223237 | 10980052 ~ 11011652 (-) | True | XLOC_010480 |
| TCONS_00022123 | lncRNA | downstream | 315455 | 10917584 ~ 10919434 (-) | True | XLOC_010479 |
| TCONS_00022122 | lncRNA | downstream | 375275 | 10849706 ~ 10859614 (-) | True | XLOC_010477 |
| TCONS_00022120 | lncRNA | downstream | 804996 | 10421170 ~ 10429893 (-) | True | XLOC_010472 |
| TCONS_00022119 | lncRNA | downstream | 805069 | 10421170 ~ 10429820 (-) | False | XLOC_010472 |
| TCONS_00020570 | lncRNA | upstream | 196649 | 11437869 ~ 11538368 (-) | False | XLOC_010482 |
| TCONS_00022125 | lncRNA | upstream | 289665 | 11530885 ~ 11538821 (-) | True | XLOC_010482 |
| TCONS_00022126 | lncRNA | upstream | 356164 | 11597384 ~ 11639472 (-) | True | XLOC_010483 |
| TCONS_00020576 | lncRNA | upstream | 533921 | 11775141 ~ 11779444 (-) | False | XLOC_010484 |
| TCONS_00022127 | lncRNA | upstream | 719410 | 11960630 ~ 11961493 (-) | False | XLOC_010489 |
| TCONS_00020564 | mRNA | downstream | 397644 | 10828787 ~ 10837245 (-) | False | XLOC_010476 |
| TCONS_00020566 | mRNA | downstream | 400133 | 10830672 ~ 10834756 (-) | True | XLOC_010476 |
| TCONS_00020563 | mRNA | downstream | 687108 | 10522596 ~ 10547781 (-) | True | XLOC_010475 |
| TCONS_00020562 | mRNA | downstream | 717919 | 10477533 ~ 10516970 (-) | True | XLOC_010474 |
| TCONS_00020561 | mRNA | downstream | 830506 | 10397440 ~ 10404383 (-) | True | XLOC_010471 |
| TCONS_00020571 | mRNA | upstream | 519382 | 11760602 ~ 11766265 (-) | False | XLOC_010484 |
| TCONS_00020573 | mRNA | upstream | 532175 | 11773395 ~ 11778933 (-) | False | XLOC_010484 |
| TCONS_00020574 | mRNA | upstream | 532626 | 11773846 ~ 11779661 (-) | False | XLOC_010484 |
| TCONS_00020575 | mRNA | upstream | 532634 | 11773854 ~ 11779514 (-) | False | XLOC_010484 |
| TCONS_00020577 | mRNA | upstream | 537051 | 11778271 ~ 11779508 (-) | True | XLOC_010484 |
| TCONS_00020567 | other | downstream | 318485 | 10916290 ~ 10916404 (-) | True | XLOC_010478 |
| TCONS_00020565 | other | downstream | 397657 | 10829809 ~ 10837232 (-) | False | XLOC_010476 |
| TCONS_00020559 | other | downstream | 973264 | 10255207 ~ 10261625 (-) | True | XLOC_010469 |
| TCONS_00020535 | other | downstream | 1932695 | 9302079 ~ 9302194 (-) | True | XLOC_010455 |
| TCONS_00020526 | other | downstream | 2755880 | 8478880 ~ 8479009 (-) | True | XLOC_010450 |
| TCONS_00020572 | other | upstream | 519699 | 11760919 ~ 11779472 (-) | False | XLOC_010484 |
| TCONS_00020591 | other | upstream | 770854 | 12012074 ~ 12012188 (-) | True | XLOC_010492 |
| TCONS_00020603 | other | upstream | 998187 | 12239407 ~ 12239460 (-) | True | XLOC_010497 |
| TCONS_00020604 | other | upstream | 1006642 | 12247862 ~ 12247920 (-) | True | XLOC_010498 |
| TCONS_00020605 | other | upstream | 1009048 | 12250268 ~ 12250323 (-) | True | XLOC_010499 |
