RNA id: TCONS_00020570


Basic Information

Item Value
RNA id TCONS_00020570
length 661
lncRNA type antisense
GC content 0.47
exon number 3
gene id XLOC_010482
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11437869 ~ 11538821 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTTTACAGAAGCATGTTTTACTCCGGCCTCAAGAGGACGCCATTTACTAAAACAGCAGCTAAAGAACAGCTAAAGGTGGATTTTTAACACTCTTCCATCAAAAGTCAACCTTGCTGTTTAACGTTTACAAGGAGGAAACGTGTGGTCGAGTTTGACAGCGTACCCTATTGATCAGCTCTCCCACCATGCCCGTCCACGAGCCGTTGGGTTCGGGTGCCCCGTACAGACCATCGTCCACCAGTTTGATGCGGAAACCTTGGCTTGTGTCTGAATTAACCAACCCAGGTCTGCTGAAGATCATccctgaacacacaacacatccaaccttgaagcagatgagcttcCGCAGAGGAAGAAGAGCACACTggtgcctctcctgtcagctGGAAACAGAAAAATGAGACTGCAATCGGCACAGAAACATGTTGCCTGCTCTAATGAGTCTCGATGTCTGCTGCAGCATTCAGATGGTTGGGGTTTTGGTGTAAACAACCcaaaagcatagatccatcctgccttttatcagtGGTTCAGACTGCTGTGGTGTAATGATGTgcgggatattttctttgcagaCGTATGACCCCTTATCCCTAACAAAGTGGTGTTGTTTAACTGATACTTATGCCCGAGTTTTGATTAAAGCCAcaaatctcaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156467

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021786 lncRNA downstream 196649 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00022124 lncRNA downstream 426217 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00022123 lncRNA downstream 518435 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00022122 lncRNA downstream 578255 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022120 lncRNA downstream 1007976 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022126 lncRNA upstream 59016 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00020576 lncRNA upstream 236773 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022127 lncRNA upstream 422262 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00022128 lncRNA upstream 423317 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022129 lncRNA upstream 454198 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00020568 mRNA downstream 196445 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020569 mRNA downstream 202297 11227946 ~ 11235572 (-) False XLOC_010481
TCONS_00020564 mRNA downstream 600624 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA downstream 603113 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020563 mRNA downstream 890088 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020571 mRNA upstream 222234 11760602 ~ 11766265 (-) False XLOC_010484
TCONS_00020573 mRNA upstream 235027 11773395 ~ 11778933 (-) False XLOC_010484
TCONS_00020574 mRNA upstream 235478 11773846 ~ 11779661 (-) False XLOC_010484
TCONS_00020575 mRNA upstream 235486 11773854 ~ 11779514 (-) False XLOC_010484
TCONS_00020577 mRNA upstream 239903 11778271 ~ 11779508 (-) True XLOC_010484
TCONS_00020567 other downstream 521465 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 600637 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1176244 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 2135675 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 2958860 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020572 other upstream 222551 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 473706 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 701039 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 709494 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 711900 12250268 ~ 12250323 (-) True XLOC_010499

Expression Profile

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