RNA id: TCONS_00001639


Basic Information

Item Value
RNA id TCONS_00001639
length 2052
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_001028
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9629161 ~ 9652725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCAAACACAACAGGGGGGAGGCGCCCCGCGGCTCTTTCAGTAAAAACAGGAAATTTTTTGGGTTACCGGACGAAGAACAAAAAACGTAACGCGATGTTCTTTGATATGAGAAGAAAACCTTTAAATAGTCTGTAGTTTGGTTCACTCAGTAAAATAAAACCCGGGCAGCACGGAGTTGTTTGGACGTTGTCGAAGTTTTTATTGGGATATTTCCCATCTCTGGTTTGAATGCCATCACAACCAAGGTTTAAAGGCTATCTAACTAACGCAAACCAGGAAATATGAATGGAAAGGTTTTTCACATGCGTTGGCCAGTCACATTAACCCTTCTACTAGTAACTGTTCCAGTTGTTGAGAGCGGGAATGTTCTTGTTTTTCCTGTGGATGTTAGTCACTGGGTCAACATGAACGTCTTGGTTGAAGCACTTCATGCCAAAGGTCACAATATTACAGTCATGAGGATGGCAGACAGCTGGTACATCAAAGAGTTCTCACCTCACTACACATCAGTAAATCTCAAGTCCTCAGGAGGACTCAGTGAAGACTTCATCGGGCCATTTGTATCCAGACTTATGAACATTTTGAGGGAAGGTTCAACATGGGGTCGTCTAAAGTTAGAGATAGAGATGTGGCAAACTAGTCTGAAGATGATTGAAATAGAGCGTGAAATGATAACCAATATGATTGAAGATCAGCAGCTTATGCAGTCTTTAAAAAaagcaaagtttgatttgatTCTTACTGATCCTGCCATGTACGGAGGGGTCATGTTGGGTCACTATCTTAAACTGCCTATTGTCTACAATGTCCGTTGGACAATATTTGGTGAAGGTCATTTTGCAATAGCTCCATCTCCACTTTCTTATGTTCCTGTTCCAATGCTGGAGATACCAGACCGCATGAGTTTCTTAGAAAGAGTTAAGAATGTTGTGATGTACATTATAACAGAAACACAAATTGCTTTTTTAATTGCCCCAACTTACAATGCTCTCTGTGAACGCTTCATTGGCCCAGAAGTAAATTTTGGCAACTTAGTTCAGGAAGCTGATCTGTGGCTCCATAGAGCTGATTTTGTGTTTGAATATCCACGTCCCACTATGCCAAACATCGTCTACATGGCAGGTTTTCAATGCAAGCCATCAAAGCCTCTCCCACAAGATCTGGAGGACTTTGTTCAGAGCTCGGGTGATCATGGTGTCATTGTCATGTCTCTGGGGACTCTCATTGGTCAGCTTCCTGATGATGTGGCCGAGGCAATTGCTGAAGCTTTCGCAGAACTTCCACAGAAGATCATCTGGAGGTACAAAGGAAAGAGACCGTCTGCACTAGGAAACAACACCTTAGTGATGGACTGGATGCCTCAGAATGATCTTCTGGGTCATCCCAAGACCAGAGCCTTCGTGGCACATGGAGGAACCAATGGAGTTCAAGAAGCCATCTACCATGGGGTGCCAATCATTGGATTTGGCCTGATTTTTGACCAACCTGACAATCTTTCTAAAATGAGAGTGAGAGGTGCAGCCAAGAATGTAGACTTTGCCACAATGGATAAGGAGTCCTTCCTTAAAACGGTCAAAGAGGTTCTTTATGATCCCTCTTATCGGGAGAACATGCAGAGACTCTCAAGGCTTCACAAGGACGTTCCAGTGAAGCCTCTGGACAACGCCATCTTCTGGATTGAGTTTGTTATGAGACACAAAGGTGCCGCTCACTTGCGCACAGAGTCGTACAAAATGCCCTGGTACTCTTATCACTCTGTTGATGTTATTCTGGTGCTGATTTCTGCTGTGTCACTCATAATCTTGAGCATATATGCAGTTATCAGATATTTCTGCTGCAGAATATGCATgagaacaacaaaaaacaaaagagtgagtttaaattaaatttacacaAAATGTGTGTAAGATATGCTTTTTACAGCTATATTGATTATTCTGGACTTTATGTAGAACAGTTTTAAGGAAATACGTCGGTTTCTTGattaaaataacatatatttGTGATCAATTATTCCTTGCATGTACATGGCAACTGAAGAACCTGTCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016740 transferase activity molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008194 UDP-glycosyltransferase activity molecular_function
GO:0015020 glucuronosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100406-4 Enables glucuronosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in brain; eye; gill; liver; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000126996

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003340 lncRNA downstream 213703 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001627 lncRNA downstream 314047 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00001626 lncRNA downstream 321183 9308271 ~ 9314795 (-) False XLOC_001023
TCONS_00001614 lncRNA downstream 473341 9157310 ~ 9162637 (-) True XLOC_001016
TCONS_00003339 lncRNA downstream 496818 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00003341 lncRNA upstream 263651 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00001651 lncRNA upstream 319971 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA upstream 326569 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00001676 lncRNA upstream 1019127 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003342 lncRNA upstream 1086440 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001633 mRNA downstream 6254 9627240 ~ 9629724 (-) True XLOC_001027
TCONS_00001632 mRNA downstream 6273 9626277 ~ 9629705 (-) False XLOC_001027
TCONS_00001631 mRNA downstream 108778 9499645 ~ 9527200 (-) True XLOC_001026
TCONS_00001628 mRNA downstream 149764 9459760 ~ 9486214 (-) False XLOC_001025
TCONS_00001645 mRNA upstream 86645 9739370 ~ 9858508 (-) False XLOC_001029
TCONS_00001647 mRNA upstream 220570 9873295 ~ 9885326 (-) False XLOC_001030
TCONS_00001648 mRNA upstream 220590 9873315 ~ 9885320 (-) True XLOC_001030
TCONS_00001649 mRNA upstream 267184 9919909 ~ 9940494 (-) True XLOC_001032
TCONS_00001650 mRNA upstream 319840 9972565 ~ 9980765 (-) False XLOC_001033
TCONS_00001629 other downstream 149898 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001617 other downstream 438012 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001610 other downstream 517307 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001595 other downstream 983323 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 1082680 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001646 other upstream 88077 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 410776 10063501 ~ 10064568 (-) False XLOC_001036
TCONS_00001657 other upstream 411149 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001660 other upstream 413506 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001661 other upstream 414154 10066879 ~ 10071431 (-) True XLOC_001036

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01020075_00000999_00002466.mRNA True 1468 mRNA 0.44 1 CI01020075 999 ~ 2466 (+)