RNA id: TCONS_00001656


Basic Information

Item Value
RNA id TCONS_00001656
length 503
RNA type processed_transcript
GC content 0.40
exon number 4
gene id XLOC_001036
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10063501 ~ 10071539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCTGGACAGTGTCCAGCACGACCAACATACCCTTTGTGCTCTGATGAGGAGATGGTGAGTGAGTTCGGAAAATCAGATCGCTTATctttaaaaaaGAGGATAAATGTCCATCTGGGTGTCGACTGGAGGGTCTTATTATTGTGGCAGATGAAGATATTTATAAACGTCTGAGAAAGACTTGTGAAAAGATTCAACAACATCAGGATGCCATTTCATTAGTGATGCAAAAGAGTGTCAAGTTTTATGAGTGTCAAAGGAAAACTATCGTCCAAACTTATATGCAAGAGCTCAGATATGCTGAATTTGCTGAAGATATTCACAAAAACCTCACGTTCCTGCACAAGAGGTCTGCAGAACTTGCTAAAGACTTACGGAAATATCACTACATGATCTGGGATCAGATAAATCAACTCCGTCGAATTGAGgtGGACATTGACATCAAAATTCGTGCATGCAAAGGATCATGCAAGCAAACCTTTGTCCATGCTATTGATAACGAA

Function

GO:

id name namespace
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0051258 protein polymerization biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04611 Platelet activation
ko04613 Neutrophil extracellular trap formation
ko05171 Coronavirus disease - COVID-19
ko04147 Exosome
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-031010-21 Predicted to enable signaling receptor binding activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be part of fibrinogen complex. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Used to study vascular hemostatic disease. Human ortholog(s) of this gene implicated in congenital afibrinogenemia; familial visceral amyloidosis; and thrombophilia. Orthologous to human FGA (fibrinogen alpha chain).

Ensembl:

ensembl_id ENSDART00000147106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001651 lncRNA downstream 82691 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 82691 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 144689 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00003340 lncRNA downstream 641226 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001627 lncRNA downstream 741570 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00001676 lncRNA upstream 607284 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003342 lncRNA upstream 674597 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001690 lncRNA upstream 808449 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003343 lncRNA upstream 872156 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 1406222 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00001655 mRNA downstream 14987 10037444 ~ 10048514 (-) False XLOC_001035
TCONS_00001654 mRNA downstream 14987 10037444 ~ 10048514 (-) True XLOC_001035
TCONS_00001653 mRNA downstream 74661 9986675 ~ 9988840 (-) True XLOC_001034
TCONS_00001650 mRNA downstream 82736 9972565 ~ 9980765 (-) False XLOC_001033
TCONS_00001649 mRNA downstream 123007 9919909 ~ 9940494 (-) True XLOC_001032
TCONS_00001658 mRNA upstream 1532 10066100 ~ 10071422 (-) False XLOC_001036
TCONS_00001659 mRNA upstream 1532 10066100 ~ 10071539 (-) False XLOC_001036
TCONS_00001663 mRNA upstream 272113 10336681 ~ 10347198 (-) False XLOC_001038
TCONS_00001664 mRNA upstream 272117 10336685 ~ 10347307 (-) True XLOC_001038
TCONS_00001665 mRNA upstream 398124 10462692 ~ 10473630 (-) True XLOC_001039
TCONS_00001646 other downstream 246626 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001629 other downstream 577421 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001617 other downstream 865535 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001610 other downstream 944830 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001595 other downstream 1410846 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001660 other upstream 1663 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001661 other upstream 2311 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001662 other upstream 205679 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001669 other upstream 555248 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001683 other upstream 760092 10824660 ~ 10841378 (-) False XLOC_001048

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_01381458_01383409.mRNA True 1187 mRNA 0.37 4 CI01000300 1381005 ~ 1383409 (-)