RNA id: TCONS_00001662


Basic Information

Item Value
RNA id TCONS_00001662
length 869
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_001037
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10270247 ~ 10272725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttGCTCGTCTTTGAAGTGTGAAATAGACATAAAACCCATGCAGACgtataaaaaaaaactctgttaaaTTGCTAAATTTTGGCCATTTGTTTTTGTGCTTCAGGATTTTGAGAACAGTGTGAAAACAGACTGAAGAATAAGCTCTAACCTTCAAACAGtaccattattaatctgggatcaccacagaggaatgaaccgccaacttatccagcatatgttttacacagctgatgcccttccagctacaacccatcactgggaaacatccacaaacatagactatggacaattttagcttacctaattcacctatagcgcgtgagtttggactgtgggggaaactggagcagccggaggaaacccacgtaaatacagggagaacatgcaaactccatacagaaatgccaactgacccagcaggggctcgAACTAGCGATTTTTTGTTGTGAGTTGATTGTACTACCcgctgtgccaccgtgctgcccattgtactgaatttaaacaaactaaataaatttagcaatgttcaacttcatttgtttgtttaaattcagcccacaaAAATGCAGCCGCTTACCTTAAAATGTAGTAAATGCAATGCATCAGTTTATTTCAATGTGTATCTCTTCACCTTTAACTCTCAGTGGGTCAACAGAACAGAACTAGATCATTATGTATTTTTCATGCGACCAGACTATCAGGTGAGAGAACTGACACACATATGTGCGAATGTTTGCGCGCTTGTAAACCCATATCTGTGTGTGCACAAGCATGTTTGTAGGAATGATTGGCCATGGTTGTGTGTCTGGCAGGGTGACTGGGGGTGATTGGCCTGCAGGCGGTGTCTGTCGTGCTTGTTCACTGACC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001651 lncRNA downstream 289437 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 289437 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 351435 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00003340 lncRNA downstream 847972 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001627 lncRNA downstream 948316 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00001676 lncRNA upstream 399127 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003342 lncRNA upstream 466440 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001690 lncRNA upstream 600292 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003343 lncRNA upstream 663999 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 1198065 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00001659 mRNA downstream 198708 10066100 ~ 10071539 (-) False XLOC_001036
TCONS_00001658 mRNA downstream 198825 10066100 ~ 10071422 (-) False XLOC_001036
TCONS_00001655 mRNA downstream 221733 10037444 ~ 10048514 (-) False XLOC_001035
TCONS_00001654 mRNA downstream 221733 10037444 ~ 10048514 (-) True XLOC_001035
TCONS_00001653 mRNA downstream 281407 9986675 ~ 9988840 (-) True XLOC_001034
TCONS_00001663 mRNA upstream 63956 10336681 ~ 10347198 (-) False XLOC_001038
TCONS_00001664 mRNA upstream 63960 10336685 ~ 10347307 (-) True XLOC_001038
TCONS_00001665 mRNA upstream 189967 10462692 ~ 10473630 (-) True XLOC_001039
TCONS_00001666 mRNA upstream 213368 10486093 ~ 10578013 (-) False XLOC_001040
TCONS_00001667 mRNA upstream 214157 10486882 ~ 10620345 (-) False XLOC_001040
TCONS_00001661 other downstream 198816 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001660 other downstream 198825 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001657 other downstream 201714 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001656 other downstream 205679 10063501 ~ 10064568 (-) False XLOC_001036
TCONS_00001646 other downstream 453372 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001669 other upstream 347091 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001683 other upstream 551935 10824660 ~ 10841378 (-) False XLOC_001048
TCONS_00001684 other upstream 551935 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001689 other upstream 597392 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001691 other upstream 620597 10893322 ~ 10903886 (-) False XLOC_001048

Expression Profile

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