RNA id: CI01000365_00096865_00101128.mRNA


Basic Information

Item Value
RNA id CI01000365_00096865_00101128.mRNA
length 3315
RNA type mRNA
GC content 0.52
exon number 7
gene id CI01000365_00096865_00101128
representative True

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 96541 ~ 102184 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATGTTAAAAAATGTATAAAGTTTAACCGAACCAAGGGAATCTGGGTTTATTTAGTTAGTTTTAGCAGATAGTCCCTGCTTGTCAATGGATGTATAATTATGTGGCGAACGCATCTTTCTCCAGTTGGTTTTTGCAATTTTTTGCAAATATTTACTTTATATTCATTCGTTGAGATTCATGCAGGTATTATAAACCTCCTTGTGAGCATCACTATGTCCTAATATGACACAGATTGACTCCTTTCTCCTTTGTTTTGGGAAGAAAACTGCAACAGCACAATTTATGTTGATAGATTTTAAAATTTTAGCTTGATCAAATAAAACATTAGTGTGCACAAAATTAGGTCTTTAGGTTGTGTCTTTAAGGGGAAAAACGAACATATGTAAGGAGTATTCTTCGACAGTCTGCTGGCTGTTTAGGACTTTTATTTTGACGGGTTGCTATTTGACCTTTTAGGCTTTTATTTTGACGGTCTGCCTGAAGATGTTCGAGGCTTTTATTTTGACGGGTTGTTCGCGGATATCGGGGCCCGTGAGCGCAGAGAAGCTTCGGTCCATCGCGAATCTTCGCAAATAAAATCGATATTAAAGCAGTAATGATCGCGCAGCAGCGTGTTTGTGCACTTTAATCACATCTGCAGGTGAGTGTGTGACCGCACATATCAGCACTGTAGATGTCAGTGTAAATCATAAACGTGGAGAGCACAAGTGAGCATAATGATTCATTCTGCGTTAATAAAGTGTTAATTACACGTAGACACTGAGTTTGTGTTGCACACGAGTTTAAATGTTAAGTGATCCTGAAGACGTGTGTGTGTGTGTGTGTGTGTTTGTTTGTATATTTGTGTGTGTGTGTGTTTGTTTGTTTGTATTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCAAGTCAAGTCACCTTTATTTATATAGTTTTAGACAGCAAATTTTATGTTTATGTTTATTTTTTTTTACTTAATTTCATTATTTATTAATATTTGGTAATTATTATTTTAATGTAATTACAGCGTCACAGTGTGTCCGGTCGGGTCATGGCGTCGGGTCCAGAGGCCGTACACTATATCCACCTCCATAACTCCAGTCAGTCGGTGCTGGAAGCCTTGAGATCTCAGCGGCGTAAAGGTCTGTTCTGCGACGTCACTGTCCGCATCCACGACGCGTCTCTGCGGGCTCACGCCTGCGTCCTGGCGGCCGGCAGCCCCTTCTTCCAGGACAAGCTGCTGCTGGGTCACTCGGAGATCTCGGTTCCGCCGCTGGTCCCGGCCGAGACGGTGAAGCAGCTGGTGGACTTCATGTACAGCGGCTCGCTGGTGGTGCTTCACTCGCAGGCGCTCTGCATCCTCACCGCCGCCTCCATCCTGCAGATCAAGACCGTCATCGACGAGTGCACGCAGATCATCTCGCAGAGACGCGCCGCAGTGGCAGGCGGAGCCTCCGCGGGAGGGGTGGGGCCCAAGCAGGAGGAGGGCGGCGGCGACGACGGGAAAGGCCGGGAGAGCGCGGCGCTGCAGGGCTTCGCTTACAGCATGGCTGGGGACTGCGGCTCGGACATGGCGGCCGCTCTGGGTGGCGGCGCTCAGGCGGAGGGCGGCGGTCTGGAAGGGGGCGGAGTCGGCCCTCTGATGCCCCTCAGCGACGAGTTAGGAGGTGGGGCCATGTGTAGAGGGGAGGGGCTTGTCGTTGCAGGGGGCGGGGCCATGCTGAAGCCCTCAAGCTGCTCGCAGGAGATCAGCTACATGCTGAACGCGGAGCGCGGCGCGAATGTGGGCGCGCAGAACATCGCCGCGAACGAGCGCGGTCAGATGGGGTCGGAGTACGGCGGTGTGGAGGAGGAGCTGGTGAGCGGCGTGGAGCGGTTCAGCGAAGACGACGAGAGAGACGTGCACGACGCCGACAGAGACACGGAGAGAGACAGACAGACGGCGCACACGCGCAAACAGAGACAGCCGCTGAGGCTGCAGGTGCTGGGCGGTGAGGAGGTGGTGGTGAAAAACGAGGGCGTCCAGGAAGGGGAGGGTCTGTTTGAGATGGACGAGAGAGGAAACGCATCACACGGCTCACATCAGCCCGCCTACGGACAGGGCGGGTTCTACGAGGACTCCAACGTCTTCTCAGGCGGCTTCTGGTCTCAAGCGGATCCGCAGACGTCTCTGGGCTCAAACCCCCGTGGCCGGGTCAACAAACCCCTCTCTCCGCCGCCGCCGCCCTCCCAGAACCTCGGCAGCCAGATGCTTTTCCAGTTTCCTGCCAGCGAATCGCAGCCCCCGTCCTTCTTCGTGGGCGGACCCATGGTGATCGACAACTTGGCTGATTCATGCCAGCAGGCCCCGCCCCCTGCTCCTCTGACCCCAGCTCCGCCCCCCTCCACCCCAGCATGCATTGCAGGTCCGAGCTTTGCACCTCAGGGCTCTGAGACGTCCTTCGACTGCAGCCACTGCGGAAAGTCACTGCGCTCCCGCAAGAACTACAGCAAACACATGTTCATCCACTCCGAGCTAAACGAAAACAAGTCTGCATTTACACCTTCATTAAACCGTCCCAGACCACATCCAGTTGAGCTTCCAGTGATCCGATGGGAGGAGATGAATGTGAAAGCAGCAAGCGCTTCACGCAGAAGAGTTCGCTCAACGTGCACATGCGGACGCACCGCGTTGAGCGCACCTTCACCTGCGGCGTGTGCCACCGTGCCTTCACACACCGCACGCTGCTGGAGAGGCACGCCCTGCAGCACCAGCATCCCACGCCCATCAAACCGCCCACCAATCACATGGAGCAGGGCAACGGCGGGATGGGCGGGGCCAGCGGACCGGGCTCCGCCTCCTAGAGACGGCGATCAGATTGAACCCAGGAGCTTTAACACTCACACTCACGACAAGCCAGAAAACCTCATAAAACACACAAACCTCATGGAGAGACTCACACTCAACGCAAACCACACAGTCCTGCGCGTGACGCCGGGACTTTAACGTCTTTTTCAATGTTTTACGTGTTTAATCTGTTTCTTAAGTGTTTTCATGGACTCATCAGAAACCACAATGACCTCAGGACCTGAAGAGACTTCAGAGCAGATTTATTACCTCCATTTTTATTTCAACATCAACCTCCATTTTTACATTTTTTATCAAGTATATGCATAAATCTTAATGATATTTTTATGGTGATATGATATGTAAGAGTTTTACGTTTGGCTTAAATGCTGCGCGGGGATCGTGGGATCTCGTATATTGTATTCGGCTTTGGTTTTCGTATCTAGCATGCGCTCGCTTTACGCTGCATGAGGCTGCATTAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10501 ZBTB20, HOF, DPZF; zinc finger and BTB domain-containing protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597013 lncRNA downstream 18248 77490 ~ 78293 (-) True G520391
TU597015 lncRNA downstream 21802 74399 ~ 74739 (-) True G520393
TU597017 lncRNA downstream 24782 71445 ~ 71759 (-) True G520395
TU597030 lncRNA downstream 67652 28672 ~ 28889 (-) True G520405
TU597029 lncRNA downstream 69816 26477 ~ 26725 (-) True G520404
TU597043 lncRNA upstream 21675 123859 ~ 244143 (-) False G520417
TU597044 lncRNA upstream 21675 123859 ~ 244143 (-) True G520417
TU597057 lncRNA upstream 24013 126197 ~ 130031 (-) True G520429
TU597047 lncRNA upstream 140322 242506 ~ 324746 (-) True G520420
TU597121 lncRNA upstream 171641 273825 ~ 286973 (-) False G520491
CI01000365_00040221_00045449.mRNA mRNA downstream 51092 39830 ~ 45449 (-) True CI01000365_00040221_00045449
CI01000365_00102657_00113817.mRNA mRNA upstream 246 102430 ~ 113992 (-) True CI01000365_00102657_00113817
CI01000365_00215623_00216039.mRNA mRNA upstream 112684 214868 ~ 218389 (-) True CI01000365_00215623_00216039
CI01000365_00326334_00327173.mRNA mRNA upstream 223891 326075 ~ 327600 (-) True CI01000365_00326334_00327173
CI01000365_00436141_00445601.mRNA mRNA upstream 333254 435438 ~ 445601 (-) True CI01000365_00436141_00445601
TU597227 other upstream 273981 376165 ~ 377658 (-) True G520557

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU4189 True 224 lncRNA 0.41 1 CI01000000 6096447 ~ 6096670 (+)
rainbow trout (Oncorhynchus mykiss) TU1643000 False 1030 TUCP 0.55 2 NC_048581.1 27929157 ~ 27931022 (-)
eurasian perch (Perca fluviatilis) TU4189 False 860 TUCP 0.60 3 NC_053112.1 8891448 ~ 8893493 (+)