RNA id: CI01000365_00102657_00113817.mRNA


Basic Information

Item Value
RNA id CI01000365_00102657_00113817.mRNA
length 3159
RNA type mRNA
GC content 0.54
exon number 20
gene id CI01000365_00102657_00113817
representative True

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 102430 ~ 113992 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTTTTTTTTATCTTTATTTACGTCACAAGTAAAACATTGTCAAAAGCTAATCAAAGTTTTAGATCTGACTGACAGGCATAAGCTGTTATATGTCAATCTACACAATTACTGTAAAATACTGTTAATTTTTATCATTTGTTAAGCTTATTACATCTGTTAATGTCTCAACACACATGACTAAAGATGGTTTAAGCCCAGATCTCAATCTCTTGTTCTTCCCTGACCGCCGGGCTCCGGTCAGTCACCTCCTGCTGGAGCAGCTGCCCAGCTACCAGTCTCTGCTGTACCGCAGGAAGTCCAGCTCCAGCGGCAGCACCCGGAGGCGGGGCAGTGGGCGGAGCCGGCAGCCGTCCGTCAGCAGCGGGAAATGGGCAGAGCAGAAAGCGGTTCACAGCGGGGAGGAGCTCAAGCCCGTGAGGGAACTTCCCAAGAGCATGCAGGACAAACGGCGGGAAAAACAGCAGCGTCTCCAGCAGGGCGGCGCTCTCACAGGCTGGGGTTTGTGGAGGCTCAATGTCCATCGCTCTCTGAAGCGGCTCAAGGAGGACGGGATGGACGTCCTCTCGTCTCTGCAGCTCTGGAGGGCAGATATTCATCTCATCGAGGAGAGCGAGTGCAGTGAGTATCCGGCCAGCTCTCGTCAGGGTCTGGTGGCATTTCATGAGCACATCACAGACCTGCTGTCTGGAACGGGCTTTCTGGAGCGCACGTACCTCTTCTTCGGCTATTATAAGCTGGAGTTCATTCATTCCCACTTCACCTACAACCTGCCGGTGGCGTACCTGCTGGCCACCATCTCGTACCTGCTGCTGAGCCTCGTCTGGATCGTCAAGAGGTCTGCGGCCGGATTCAAACGCAAGCTGATTCAAGACGAGGATCGCTTCCAGAGTTTCTGCAACAAGATCTTCGCCGGCTGGGACTTCTGCATCACCAACGAGAACGCCGCGCGCCTCAAGCGGAGCAGCTTACTGTACGAGCTCAAGACGGATCTGGAGGAGGAGCGGATCAAGCGCAAGATGGCGAACCGCACGCGCGGCGAGAGGTGTCGCATCTACGCGCTCAGAGCCGCTCTCAACCTCGCCGTCATGGCCGTCCTGGTGGCGTGCTTCTACTGCATCTACATCGCCACGGTCTTCTCGCAGCGCAAGCAGGCGGAGGTGATGTGTGTGTTCATGCGTTTGGCCAGCATCGGTGTGCTGCTCTTCTCTCTGTGGGTCCAGATCACGTCCTGTGGAAGTTTAGACTGTTCCTGCGGCTACAACCATCGGATCTACCCTTGCTGGGAGACTCACGTCGGGCAGGAGATGTACAAACTTGTGATCTTTGACTTCCTGATCATCGCCGCCGTCACCATCTTTGTGGAATTCCCTAGGAAGATCATCGTGAGTCACTGCCACTGCGGTTTGGCCAAGTGGTGGGGTCAGCAGGAGTTCGCTGTCCCTCAGAACGTGCTGGAGATTGTCTACGGCCAAACCATCTGCTGGATAGGGACATTTTACTGCCCTTTGCTTCCCGCCATCAACACTGTCAAATACATCCTCGTCTTCTACCTCAAAAAGGTGTCTCTGGTGACTAATTGCCGTCCCGCCACTCGTCCGTTTCGAGCGTCTAGTTCTCACTTCTTCTTCCTGGTGGTGTTGCTGATTGGTTTGGCTCTGGCGTCTGTTCCTGTCATCGTCAGCATCGCAGAGTCTGCGGCCGGATTCAAACGCAAGCTGATTCAAGACGAGGATCGCTTCCAGAGTTTCTGCAACAAGATCTTCGCCGGCTGGGACTTCTGCATCACCAACGAGAACGCCGCGCGCCTCAAGCGGAGCAGCTTACTGTACGAGCTCAAGACGGATCTGGAGGAGGAGCGGATCAAGCGCAAGATGGCGAACCGCACGCGCGGCGAGAGGTGTCGCATCTACGCGCTCAGAGCCGCTCTCAACCTCGCCGTCATGGCCGTCCTGGTGGCGTGCTTCTACTGCATCTACATCGCCACGGTCTTCTCGCAGCGCAAGCAGGCGGAGGTGATGTGTGTGTTCATGCGTTTGGCCAGCATCGGTGTGCTGCTCTTCTCTCTGTGGGTCCAGATCACGTCCTGTGGAAGTTTAGACTGTTCCTGCGGCTACAACCATCGGATCTACCCTTGCTGGGAGACTCACGTCGGGCAGGAGATGTACAAACTTGTGATCTTTGACTTCCTGATCATCGCCGCCGTCACCATCTTTGTGGAATTCCCTAGGAAGATCATCGTGAGTCACTGCCACTGCGGTTTGGCCAAGTGGTGGGGTCAGCAGGAGTTCGCTGTCCCTCAGAACGTGCTGGAGATTGTCTACGGCCAAACCATCTGCTGGATAGGGACATTTTACTGCCCTTTGCTTCCCGCCATCAACACTGTCAAATACATCCTCGTCTTCTACCTCAAAAAGGTGTCTCTGGTGACTAATTGCCGTCCCGCCACTCGTCCGTTTCGAGCGTCTAGTTCTCACTTCTTCTTCCTGGTGGTGTTGCTGATTGGTTTGGCTCTGGCGTCTGTTCCTGTCATCGTCAGCATCGCAGAGATCCAGACGTCGCGGGCGTGTGGCCCGTTCGTCAACTACACTACATCGTGGCAGGTAGTGCCACGCGTGATTAACCAGCTGCCCTCGGGCCTGCGCTCCTTCCTGCTGACGCTCGCCTCCGAGGCCATTGCCGTGTCCTTCTTCGTCATCACGTGTCTGGGGATGTTCTATGTCATTGCCTTGGCTGGAGCTCATAAGCGTGTGATTGAACAGCTCCGAGATCAGCTGGTCATGGAGGGCCGCGACAAGCGATTCCTCATTCAGAAGTTGTATCAGGCCCAGCAGGCCGTATGCGCTCGTCCTCCGCGGGGTTTCCGCAGAAACCATCCTGACGCCGGACTGTATTTAGTGGAGCCGTCAGTGGTGCTGGAGACGCAGGCCTGACCCCGAACCATCACCAGAACACACTCACTCATTCCGTTGTTCCCGTCTCTCATTGCGGGATCTAAAGCTGCTCCTGAAAACACTAAATTAACTAGCTTTACACTTCACCCTGATTACTACGTTTACTGTCTAATGTTACTGTAATTTTGTTCTTGTTTATGAAATATACAACCTTAAGGGAATATCCGCTTGTTGTGAGTGAACTGCTTTACTATCTGCACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597013 lncRNA downstream 24137 77490 ~ 78293 (-) True G520391
TU597015 lncRNA downstream 27691 74399 ~ 74739 (-) True G520393
TU597017 lncRNA downstream 30671 71445 ~ 71759 (-) True G520395
TU597030 lncRNA downstream 73541 28672 ~ 28889 (-) True G520405
TU597029 lncRNA downstream 75705 26477 ~ 26725 (-) True G520404
TU597043 lncRNA upstream 9867 123859 ~ 244143 (-) False G520417
TU597044 lncRNA upstream 9867 123859 ~ 244143 (-) True G520417
TU597057 lncRNA upstream 12205 126197 ~ 130031 (-) True G520429
TU597047 lncRNA upstream 128514 242506 ~ 324746 (-) True G520420
TU597121 lncRNA upstream 159833 273825 ~ 286973 (-) False G520491
CI01000365_00096865_00101128.mRNA mRNA downstream 246 96541 ~ 102184 (-) True CI01000365_00096865_00101128
CI01000365_00040221_00045449.mRNA mRNA downstream 56981 39830 ~ 45449 (-) True CI01000365_00040221_00045449
CI01000365_00215623_00216039.mRNA mRNA upstream 100876 214868 ~ 218389 (-) True CI01000365_00215623_00216039
CI01000365_00326334_00327173.mRNA mRNA upstream 212083 326075 ~ 327600 (-) True CI01000365_00326334_00327173
CI01000365_00436141_00445601.mRNA mRNA upstream 321446 435438 ~ 445601 (-) True CI01000365_00436141_00445601
TU597227 other upstream 262173 376165 ~ 377658 (-) True G520557

Expression Profile