RNA id: CI01000365_00326334_00327173.mRNA


Basic Information

Item Value
RNA id CI01000365_00326334_00327173.mRNA
length 1526
RNA type mRNA
GC content 0.54
exon number 1
gene id CI01000365_00326334_00327173
representative True

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 326075 ~ 327600 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCGCCTAAGTTGTGCTAGAGCAGCAGTACTATCGGACCAGGACTGTAATGGCACTGTGCACGCAATGACATATGACAGACTAACAGATATTAACTCTGAGTTTATGTGTTTCTACTTCCAATCTGCAGTTAAAGCAGCTGACAAGATATTTATTTTAACCAAATTTTGCCTCGTCTTTGCCCACGTCTCCTTCATGAAGAAAGTTCAAGATGGTGGTTCAAAAATGTTGATTATAAAGCAATAGTGTCTTGTACATGAATTGTCATGTGACTAACGACGGCAGAATCATTGATGAATCATTCAGAATGATCTGTTTGTGTGTGTGGTTTTCTGACTGTGGTGTTTTGTGCGTTCGCAGGTGATATCAGATTCCCATCCACAGTCATGTGGTGATACGATCTCTCTCTCACACACTCACACACATCATGGCGCATCCGTACGACCCCTGGTTGCGCGCTGGGCCGCCGCAGGACGAGGTGAGCGTGTCCGGCTGGTGGGACGTGCACACTGGAGCCGCGGCTGGCTGGATGGACCTGCAGGGGGCGGGGCTGGGGGCGGGGCCAGGGCAGGGCGGACCCATGAGCTCCTACACAGCCGACCCTCAGATGTGCTGCCTGCCTCCCTCCGGCTCCGCCCACTCCGGCCTGCACTTCCCCCCTGAGGGCTTCAAAATGGAGCCGTTGCCGCAGGATCTGCTGCCGCTCCCGCAGGCCTCGTCGTCCTACTCCTCGGAGGAGCCGCAGGACACAGCGGGGGCTTCTGCACGGCCGAAGTCGCAGCGACGCGCTGGTGGTCGGGCTCCCGGTCAGGCCTCCTGCCGCTGTCCCAACTGTCTGAGCGCCGAGTCCCTGGGAAACAGCAGCGGCAGCAGCGACGGCAAACGCAAACACCTGCACAACTGCCACATCCCCGGCTGCGGGAAAGCCTATGTGAAGACGTCGCACCTCAAAGCGCACCTGCGCTGGCACAGCGGCGACCGGCCTTTCGTCTGCAACTGGCTGTTCTGCGGCAAGCGCTTCACCCGCTCGGACGAGCTGCAGCGCCACCTGCAGACGCACACCGGCGCCAAGCGCTTCGGCTGCAGTTCCTGCCCGCGTGTCTTCCTGCGCGCCGACCACCTGGCCAAACACGTGCGTGTGCACGAGTCGCCCTGCCAACCTGCCGAAGAGACTCACTCGGCGACGGGAAGCAGCACCGGTGCGACGTCACTGCTCAGAGTCAAGACGGAGTCAGAGAACGGCGACGAAGACACGACGAACGCCTAATCGACTCTGATAAACGAGACTCATCATTCTGAAGGCGACTGATATGAACTATATTCACATCTGTAAATGACCTGTAGAAGGTGGCATTGGCATGTAACACGTAACATAATGCTTTTATATCTTTAGTTTTATTTATATTTGTACATTTTGTGTTTCATTCTCTGTTGATTAACTTAAAGATGTTGTGTGTCGTGTGTGAGTGTTTTTGTTGCTGTAATCTCAAGATTTGTAGTGAAGATATGTCATTAGTTTGAATAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09196 SP6; transcription factor Sp6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597047 lncRNA downstream 1329 242506 ~ 324746 (-) True G520420
TU597045 lncRNA downstream 33175 291733 ~ 292900 (-) True G520418
TU597120 lncRNA downstream 34424 280805 ~ 291651 (-) False G520491
TU597124 lncRNA downstream 35547 289764 ~ 290528 (-) True G520491
TU597121 lncRNA downstream 39102 273825 ~ 286973 (-) False G520491
TU597239 lncRNA upstream 66929 394529 ~ 398108 (-) True G520565
TU597245 lncRNA upstream 78101 405701 ~ 410085 (-) True G520569
TU597256 lncRNA upstream 89149 416749 ~ 418336 (-) True G520573
CI01000365_00215623_00216039.mRNA mRNA downstream 107686 214868 ~ 218389 (-) True CI01000365_00215623_00216039
CI01000365_00102657_00113817.mRNA mRNA downstream 212083 102430 ~ 113992 (-) True CI01000365_00102657_00113817
CI01000365_00096865_00101128.mRNA mRNA downstream 223891 96541 ~ 102184 (-) True CI01000365_00096865_00101128
CI01000365_00040221_00045449.mRNA mRNA downstream 280626 39830 ~ 45449 (-) True CI01000365_00040221_00045449
CI01000365_00436141_00445601.mRNA mRNA upstream 107838 435438 ~ 445601 (-) True CI01000365_00436141_00445601
TU597227 other upstream 48565 376165 ~ 377658 (-) True G520557

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001412 True 1144 mRNA 0.61 1 NC_007112.7 59538755 ~ 59539898 (+)
bowfin (Amia calva) AMCG00016616 False 897 mRNA 0.69 1 CM030122.1 26159026 ~ 26159922 (-)
tiger barb (Puntius tetrazona) TU11459 True 1655 lncRNA 0.46 2 NC_056699.1 29496887 ~ 29500697 (-)