RNA id: TU597121


Basic Information

Item Value
RNA id TU597121
length 3348
lncRNA type antisense_over
GC content 0.38
exon number 8
gene id G520491
representative False

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 273825 ~ 291651 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGACACACCACAAACTATCTGAACATAAATGTGAATGACCAGCTTGAGCTGTAAGGAAACTCACCCCAATGATGTAGCGGAGGATATTTTGCTCATCACATCTGCTGAGGACATTTTTATCATCATTATCACTGGGCTCTCCATCTGTGATGATCACCAGGGCTTTCTGAGCGTTGAGATCGGCTCCAGACGACGCGTCATTCAGGAGATTCGTTAAGACATAGTCGATTGCTTTGTGTGTGTTTGTGAGAAATTTCATGTGTTTCTCTTTCATGAGTTTCTCTTCAGCGGAGCCGTTCTGATAATCATTGAAGTCGAACACAGTTCTGATCTCTTTTGAAAACTGGACAGCAGCAAACTTATGGATGAGTTTGAAAGTTTCTTCATAACATCTTTAATGAAGTGTTTGTTCATTTCAAACTCATGTGCTTTCATACTGGAGGATCCATCAAAGAGAAACACCAGATTGACTTCTCTCTTCGTGCATTCTGCAGAAATATCACAAGATATGGAAACACATCCGTTACACCAACTTCTTTTAGCAATTAAACTGTAAATTATTGACAAGATGGCCAATGAATCCATGTATTTCCCAAGTATTTAACATTATCTTTAATCATGTCTTTAGTCCTTAATCGAGTTGTCAATAAACATCACTTCAACTGAAATGTTACTAACTAACAAACTAACACATGTTTTACAGTACTAAAAATTGTTAAATTGCAATTCACAAGTTAGTTTGCCCATATAATCTTTAAGCTATTAAGGTTAAATTTATTTGGCTTGCTGTCCACAGTGGAGGGGCTCGAGGCAGCAGCTTCAACTCAAGCTTAATAGTGAAGATGAGTCTGGTAGCAAGATGCCTAAATTATGTTGATGGAGTTGCTGATGCCAGAGCAAGAGGTGAAGATCAGACCTCCAAAACCAAGACCATTCAAGACCAGAGGTGTGGTCGAGATCAGACCTTCCAAGTCCATTCAATCAAGATAATTCATTAATCATGTGACTATTGAATATTAATAATTAGCACCTGCTGTTAAAAGCACAATTTTGTGAACCATGATGGAGATCAGGGTTTGCTTTAGTTGAGCTCTTGACCCTTTACTTTTTAATAGTAAATTTTGTTTGGGCTGCTGTAACTGAGTTATAACAGCCAGACAAGCAAAGAGAAAAGATGGTCAGGTGGTGTTGGTAATGTTTTCACATAATCATAATTTGGACCTGAATCACTGAACTCATTTAGAGTTAGATTTACATTATTGATTACAGCAGCACTGTGATTCTACAGCAGAAGATCAGCTTTTTCAATATAATCCAAAGGATTTCTCAAAAGTTGTTCTGATAAAAAAACAAACAAACAAGCTTTGTCTTAGACACACACAGACATCAAGAATCAGCCTGTGAATCTCAACAACAGTGACAATCAACATTCTGATAAACAGATCAACTCTGAACATTAGAAAACAAGCTACTAAAAAGTCACATAAACAGAACCAAATAAAATAGTGAGAATAAAGGAAATTACTAAGACAATTCAGCTCATAATTTATTCATTAATTTTCTAAGAAACTATCAGATTAAACTTCGATCAGAGGGAGACGACAGATCACGCATCATGTTTGTTTTCTTTATTTTGCAAAAAGCACATCATTTTGTTTTTGCTCTGAGTGTACACAAATAAAAGAAGATATTTCACAGATTAAAATGGTGTATAACTCTTAATTGTATGGGCAAAATTGACGGAGTATTTTGAGTCTCTTTCATACTGATAAGAAAAAAAGCAAGGTGGTATCGCCAACGCGATCGCCAACTCAAGGGGGTTAAAAAGTGAAGGGTCAAGAGCTCAACTAAAGCAACCCTGATCTCCATGGCGGTGACTTAAAAACTGATTTTCTCCTTTGGTGATTCTGCTTGTTAACATCAGATCACCTTCCTGACACATTTACTGTGTTAAAATCATAACACAATGAATGTGTCAGAATTAACACAACAAGTGTTATCCCTAAACTCACACACTGATGTGTAAGAATTTTGTCTATTGTAAGTTTAAATTTAAAATGTTTTTGATTTTAACATATAGCCTATGTTTAAATGTTTTTCAACTTAATTTAGCAATTTAATATATAAATCTAAAGTATTACTTTATATAAATATAAAGTAATGAATTGAATAAAACGTTGTTTAAATGTAGTGCGTTTAAACGTGACATCTATGAAAGAGCCTGTGTACAAAGAGAATCGCAATGCTGACAAGCCATGTTCAGTAACAACTTTTGGATTTGAAATAAAAATAAGTAAATGTTGTGTTTATGATATACAGCCACGGATCAGTTGCGCACTGCAAACACGGCAGGTGTGAAAGCACAATAGCACGTGTTGTCCTGCAACGCATATGAAACGGGCGTTAGAGCAGGTGGTGTGAACTGGACGGACTACAACTGACATGACTCAAAGCATCGCATGACTTCAAGATTTGCAATATAGTGCACAAGTTATAATGACCACTTTTCAGATGCATAATAGCTTCAGTCCCAGTTCACTGGAATTGCCTAGAAAAAAACACTTTCACATTCACCTTTCGTGTGGGTTTGTAATGATATGAGGGAGAGTAAGTGATGACAGACTGAATTTCAGGGAAGTTTTAGAGAGTTGCCAATTTCTCTCCTACAATTTACACTGGTATGACAGTCAATAAAAACATTCCTGCAGTGTTTCCCGCTCTTCAGTGGACACGAGTACAGAAGAGACTGTGATCAGGAGTCAAACGCTGAAGTGAATAATGAAGGAAGCTGCTGAACTTACAGTCAAGCGTCCGACAGCAGCAGACGACACAGCAGTAGACATGCCAAAGAACCGGACGCTCTCTGAGCCTGGCCAGTGCAGCGGTCTGCAGGACAGCAGATCTACTGTGCAGCTGTAAATTTCACCTGTTGAGTTTCTTTTTAATGGGGCTCCAACGATGATCTGTTTCCTGTTTTCAAACTCAGACTGATAAACGCTGTAACCAAAGAAATCTTCTGCCGTGCCGTTAAATCTCAGTGGATGTTCAGTGTCGATATTGAAGGCCTCTGAAAGAGACGCCCACATGAACAGAATCCAGCCGAGCGTCTCCATCCTGCTGCTGCTCGTCTGTGTGACAAATGTCTTCCTGTTCATTTCTTCATGACAAACTCATTTCCTCATTAACACGCTGTTTCTCACACTTGCAGGGCGTGTGTGTGTGTTTCTCACAGATCGAACAGCAGATCTGCAGCTCTGTAGATGCATTAAGTCATGGTGTTCGTAATCATACTCATCACTGAGGAACCTGTATCTGACATTTCAGTGAGTCAAATAAGTATCTGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597043 lncRNA downstream 29682 123859 ~ 244143 (-) False G520417
TU597044 lncRNA downstream 29682 123859 ~ 244143 (-) True G520417
TU597057 lncRNA downstream 143794 126197 ~ 130031 (-) True G520429
TU597013 lncRNA downstream 195532 77490 ~ 78293 (-) True G520391
TU597015 lncRNA downstream 199086 74399 ~ 74739 (-) True G520393
TU597124 lncRNA upstream 2791 289764 ~ 290528 (-) True G520491
TU597045 lncRNA upstream 4760 291733 ~ 292900 (-) True G520418
TU597239 lncRNA upstream 107556 394529 ~ 398108 (-) True G520565
TU597245 lncRNA upstream 118728 405701 ~ 410085 (-) True G520569
TU597256 lncRNA upstream 129776 416749 ~ 418336 (-) True G520573
CI01000365_00215623_00216039.mRNA mRNA downstream 55436 214868 ~ 218389 (-) True CI01000365_00215623_00216039
CI01000365_00102657_00113817.mRNA mRNA downstream 159833 102430 ~ 113992 (-) True CI01000365_00102657_00113817
CI01000365_00096865_00101128.mRNA mRNA downstream 171641 96541 ~ 102184 (-) True CI01000365_00096865_00101128
CI01000365_00040221_00045449.mRNA mRNA downstream 228376 39830 ~ 45449 (-) True CI01000365_00040221_00045449
CI01000365_00326334_00327173.mRNA mRNA upstream 39102 326075 ~ 327600 (-) True CI01000365_00326334_00327173
CI01000365_00436141_00445601.mRNA mRNA upstream 148465 435438 ~ 445601 (-) True CI01000365_00436141_00445601
TU597227 other upstream 89192 376165 ~ 377658 (-) True G520557

Expression Profile