RNA id: TU597120


Basic Information

Item Value
RNA id TU597120
length 959
lncRNA type antisense_over
GC content 0.44
exon number 8
gene id G520491
representative False

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 273825 ~ 291651 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNGTCACCAGACCCATGTGTTCAGCCCGCGGCGCCCCAGAGAACAGAAGAGAGACGCCGCCTCTCATTCCCAGCACAGCAGAGTAACCCATGTACGAGTCTTTACTGACAGACGGATCCTTAATCTCGGTCTCTTTGAATCCAGATCCTGATCCCGTCACTTCATACAGAGATCCACTCCAGTCATTAGATCCAACCGAACCCACAATCACAGAGTCCTTGTGGTAGAGGACACTGAATCCACTTTGCGATAACTCTTTCGGTCTGTCTTTGCTGTGTGTGTCCTTTGACCCTTCAATGTTGTAGATCTTTTTTTGCAGGTTGTCAAGAAGTCCTTCGAGTCCACTGTAGTTTTCAATGTAGAAGGTGTTGTTTTTTTTTGGTTCTGAAGCCAGCTGAGTGAGTGTGTGTAAGCTAACATGTCCCACCCCAATGATGTAGCGGAGGATATTTTGCTCATCACATCTGCTGAGGACATTTTTATCATCATTATCACTGGGCTCTCCATCTGTGATGATCACCAGGGCTTTCTGAGCGTTGAGATCGGCTCCAGACGACGCGTCATTCAGGAGATTCGTTAAGACATAGTCGATTGCTTTGTGTGTGTTTGTGAGAAATTTCATGTGTTTCTCTTTCATGAGTTTCTCTTCAGCGGAGCCGTTCTGATAATCATTGAAGTCGAACACAGTTCTGATCTCTTTTGAAAACTGGACAGCAGCAACTTTATGGATGAGTTTGAAAGTTTCTTCATAACATCTTTAATGAAGTGTTTGTTCATTTCAAACTCATGTGCTTTCATACTGGAGGATCCATCAAAGAGAAACACCAGATTGACTTCTCTCTTCGTGCATTCTTGGTAAGCAGAGGTAAAGTTTGAGACGGCTTGTAAACTGCTGTTGAACTGGTAGCAGATGCCGTTCAGATACGAGTTTCCATCACAGTCATGAGGAAGATACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597122 lncRNA downstream 2577 273825 ~ 278228 (-) False G520491
TU597043 lncRNA downstream 36662 123859 ~ 244143 (-) False G520417
TU597044 lncRNA downstream 36662 123859 ~ 244143 (-) True G520417
TU597057 lncRNA downstream 150774 126197 ~ 130031 (-) True G520429
TU597013 lncRNA downstream 202512 77490 ~ 78293 (-) True G520391
TU597045 lncRNA upstream 82 291733 ~ 292900 (-) True G520418
TU597239 lncRNA upstream 102878 394529 ~ 398108 (-) True G520565
TU597245 lncRNA upstream 114050 405701 ~ 410085 (-) True G520569
TU597256 lncRNA upstream 125098 416749 ~ 418336 (-) True G520573
CI01000365_00215623_00216039.mRNA mRNA downstream 62416 214868 ~ 218389 (-) True CI01000365_00215623_00216039
CI01000365_00102657_00113817.mRNA mRNA downstream 166813 102430 ~ 113992 (-) True CI01000365_00102657_00113817
CI01000365_00096865_00101128.mRNA mRNA downstream 178621 96541 ~ 102184 (-) True CI01000365_00096865_00101128
CI01000365_00040221_00045449.mRNA mRNA downstream 235356 39830 ~ 45449 (-) True CI01000365_00040221_00045449
CI01000365_00326334_00327173.mRNA mRNA upstream 34424 326075 ~ 327600 (-) True CI01000365_00326334_00327173
CI01000365_00436141_00445601.mRNA mRNA upstream 143787 435438 ~ 445601 (-) True CI01000365_00436141_00445601
TU597227 other upstream 84514 376165 ~ 377658 (-) True G520557

Expression Profile