RNA id: TU597045


Basic Information

Item Value
RNA id TU597045
length 751
lncRNA type intronic
GC content 0.44
exon number 2
gene id G520418
representative True

Chromosome Information

Item Value
chromosome id CI01000365
NCBI id null
chromosome length 458031
location 291733 ~ 292900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTAGCCACAGTTCTGAGAGCATTCCCTGTTAGTTGGGGTGTTTGAGATTGAGGGAACTAAAGCAAACTCTCACCTGAGCGTGGTCGGGGTTTATTCCATGTGTCCTGTCACCCAGGTAGATGTAGACGACTCCCTCTCCTTCATTCTCAAGCGGCGCCCCGACTGCCACATCTGACAGGCCGTCTCCATTCAGGTCCTTTAGTGAAGCCAAAGATGCTGCAAATCTGCCTGTGTTTGACTCACTCACATTCAGTGTCTTCTGCAAATCTCCTCTGATACAGCGTAGACGTACAGCCTCCCTTCTGCCCTCGGCTGAGACTGATAAAATAACGGAGCTCCGACCAGAAGGAAATCTGATTCTCCATCCGAGTCCAGATCCAACACACTCAGAGACGCTCCGAAATATGACCCGATCTGATGACAAAAATCAATCAAATCGAATGTAATTGTATACTAGCATAAGCTATGTGTAGTCTGTTCACTGAAAAAAGAATTATGAAAACATTTTCTGCTTTACCAAGGCAAAGGTCAATATAGTAATTATTTTTCTTTTTCCCAGTTGGAGATGGCATTGCAGGGCCCATATTATAAGTGTAATGCTTGTTTGTTTGGGTTTTTTTGTGAAATGCTAAACCTCATGAGAGTGTGTCTTATTGGGTGGACTGTAGGATTTGGGAAGCTCTGCTCTCACCAGTGCAGAGTGTTAATATCAAGTCAAAGGGTTCTTCTTCACTAACTTGTTCTCCGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597120 lncRNA downstream 82 280805 ~ 291651 (-) False G520491
TU597124 lncRNA downstream 1205 289764 ~ 290528 (-) True G520491
TU597121 lncRNA downstream 4760 273825 ~ 286973 (-) False G520491
TU597119 lncRNA downstream 10117 280805 ~ 281616 (-) False G520491
TU597122 lncRNA downstream 13505 273825 ~ 278228 (-) False G520491
TU597239 lncRNA upstream 101629 394529 ~ 398108 (-) True G520565
TU597245 lncRNA upstream 112801 405701 ~ 410085 (-) True G520569
TU597256 lncRNA upstream 123849 416749 ~ 418336 (-) True G520573
CI01000365_00215623_00216039.mRNA mRNA downstream 73344 214868 ~ 218389 (-) True CI01000365_00215623_00216039
CI01000365_00102657_00113817.mRNA mRNA downstream 177741 102430 ~ 113992 (-) True CI01000365_00102657_00113817
CI01000365_00096865_00101128.mRNA mRNA downstream 189549 96541 ~ 102184 (-) True CI01000365_00096865_00101128
CI01000365_00040221_00045449.mRNA mRNA downstream 246284 39830 ~ 45449 (-) True CI01000365_00040221_00045449
CI01000365_00326334_00327173.mRNA mRNA upstream 33175 326075 ~ 327600 (-) True CI01000365_00326334_00327173
CI01000365_00436141_00445601.mRNA mRNA upstream 142538 435438 ~ 445601 (-) True CI01000365_00436141_00445601
TU597227 other upstream 83265 376165 ~ 377658 (-) True G520557

Expression Profile