RNA id: TCONS_00001673


Basic Information

Item Value
RNA id TCONS_00001673
length 3785
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_001042
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10642322 ~ 10647484 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atctaattaccggaattattattttatattaaaccgataagaatctaattaccggaactataaagtttatatcaaaggggcggggcttagaccggaagtcccgccttagggggcggggctacaatccatcaaactttttgacaggtgCCGCATCATAATAACTACTGAAGAGGTTAGACATGCTGCATCTTCTAATCGCTTTAGCTTTGCTCAGAGGAGCTTATCCTTTGGAAATTGTGGCACGAGGAGTAACGGCTGTTGTGTTTGGTCAGGATGCTTCTCTCTCTTGTATCCTGCCGTTCGCGTCCGGCGTCAAACAGGTGACATGGCAGCGGGTGCGCGCGCAGGATGTACACACTCTGGCCACGTTCAGCGAGCGCTTCAAGGATAATGTGGACGAGGACTTTGTCGGAAAAATCACTTTCCAAGCATCATTTAATTCAACAACTATTGagataaaaaacacaacatttgAAGATGAGGCTTGCTACATTTGTTCCTTTAAGTATCCAACTGGACCCAAACGAGAAACCTTGTGCGTCACTGTTAAAGGTATCTCAGAAATAACAGCGGCAGTGAATCCTGCAGACACTTCTGACACAGAAGTTGTGGTTTCATGTTCAGCCACTGGTAAACCAGCTCCAACAATCCAGTGGAAATCCAGAGAACAAGAGCTGAAGCACTTCAGGTCAGATGATTTCACAACCTACAACAAAGACAGCTCAACCACTGTTACAAGCAACATATTACTTCTGCTATCCCAGTTTCATGGCAAGTACGTGGAGTGTTTGGCTCAGAGTGATGAGATTGAGAGGAGCGAAACAATTTATTTACCTCGACAACAACATCCTGATGAAGGTAACAAATTTAACATGGACTTCCGCTAAAATAAAACCCACACCTTTTGTTTAGTTTGAAGGATTCAGATTTCCACCTTCAAATCCATCTCAGCATGAATCAttgtttatccttttctcatcatcctgCTTCTcattacttttattaaatataattatgtgAATATTCGAATTagtatttaactttgaattgattttaaccaATGAATAAGCTAACACACTGCTTTACGTAAGAATGGTAAGTGTCCTTGCTGCCCTCTTTGTCtgtgtattttaattttgtttttaggaGACTAGGTCATAGTCATAGAGAGAGACCTCTTTCTCCCTTTGAACGGAATTATTGATGCTGAGGAGGGGGGAAACAACTATTTTTATTTGTCATAATATTGTCTACAGTAATTTAGCTGTTTTGATTGTTAATTCTTTTTTAAGTAATTCCTTTTTATGTTAGATAGACTTTGTGTGTAGTGAGGATATTGTAGCCGAATGTTGATTAAACCAGTTTTTAACCACTTTGATGAGACAGCTCAACATACAAGAAAACAACCTTGAGTTTTTACAACAGATTGTCTCTTGCGTCTAATGCGTCCATGGCTTAGCTTTTTAAAGGTCGGAGATCAGCTCTTAACAGTTTAGGGTTGGCTTGACTCCCAAGAACTATgccgccatccatatctggagctAGATACAATGCTTCATTCACGCACAcgtttagaattgtctatttttgctgtaaccaatgagaactgtttacctggatcccacctttTTTGGACTTGTGTAAATAGTATAATTTAGATTAAGTCAGATCTGCCTGCAAGCTCAGCTTGATTGTGAAGCCCTTCTGCCATAGAACTGCAAACTATCTAATTTTCATTCTTAATTGCATCTTCGTCTCTGAGTCTTCTCTTCATCTGACACACCAGACTTTTTCTTAAACTGTTTATCTTAAACCCCAACAAGTTATACTCTATTGTTAGTATTGGGATGTTACAATTTTAAGCACAGGTGacgcattggcgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttagcgtttctgtgtggagtttgcatgttctgcctgtgtttgaTTGGATCTCCTCctgttgctccggtttcccccacaatccaaagacacgtggtacaggtaaaattgggtaggctaaattgtctctagtgaatgagtgtgtatggatgtttcccagagatgggttgcaactggaagggcatctgctgcgtgaaacatgtgctcAATAAGTTGGCACATCAtttcgctatggcgaccccaggttaataaaaggactaagccaaaaaaagaaaatcaatgaatgaattttaagcACTCTCATTAGGTtgccatttgaatgtttttacctatagtatttatttattcattcattttcttttcagcatagtctctttattaatcaagggttgccacagcggaatgaaccgccaacttatccagcatatgttttacgcagcagatgcccttccagcggcaacccatcactgggaaaactgCAGTATTCATCAGTGTTTAATgaaaaatattgcttttttttgtctttcagaTGCATCAAGAAATTACATCATCACATTTTCGGTCCTTGCTGTCATTGCTGTTGTGGTTATTCTCATTACTGTCGTCTTTATTTACTGCAAACGAAAAAGTGAGCAGCAATATTTTATCTCTCTTGCATTAAATGATATTATAACATAGCAAGCTGTCATCTCTTTAGAGTAGCATGTCAATTATAAACtattgtaatttaaattaaaaagagtgtttcatttttaaggAGACCGGTTTTGGCTAAATTCTTCTGCTGAAAAACTTCATGACTCAAATGAGGAATGTTAAAGGAGGAGAGCTACCTCAAAAGCGTATCGTTTGTTTTGTCactgagattttttttgtgtgtgtttcttaaAGAATTCCTTTATTTccaatttttacttatttattaaatgaattgaatttatttttacattactatgtAATGCTACAATATACAGATTTGGTATATTTTGATAGAAGCTGGTTGAATGTAATGGAATttcacaacatttttttattacatccTCTAAAGTTGAAACAGTAATTTATAAATGCAAGTTCTGTGTTGTTCTTTCTTTAATGTTTTCTCGTGATGTCATGAAGGAattttttgatgattttaatGTCATCCTATGTATTAATAGACTAATCCTTTCATTAATAGTTTAATTCTGTTTTTAACTTATTACATGAATGCATGCTGATGTGTTTATCTGCATATAACCGTATATGCTTAACCTCATCTAACCTTGCTCCATAACAGCTGTGTCTTTATGTGACTGATAACCGAGAAGTTAACTCCTCTGTACTTGTTATCAACAAAATGTTACAACTATACTTTCAGAGTGTGCTCATTTACAGGAACAATATCGGACGGGAAGGGCGAAGGGTCTCTGCAGGCTCTGTTATGTGTATGCTTAACTTTTTCTATGCAGATTTGCTGTTCTGCCTAACAACTGATGATTGAACTGATCTGGATGGAGGATATTTTTTACTGAAGTGTGACGAAGGGAGACGACGATAAATATGGGTGGAACGAGGGTGTGGTTGTGTGTGCCCAGCTAACACAGACTGCCTGTGTTGCTGTTCTTTGAGACCTGGAGCTCTGTAATGCTTTCTTTatctaattaaataaattgtttaaacttatttaaagcCTCTGACTGATGTTTTAACCTGGTAGGACAAGGAGAAGTCCAATAGTCATTCCTCAGTATTGCTTTAAACAATGACAGTCATttgaggaagaagaaaaaaaacattgtttactaATTTAACCAAAGAATTAAAAGTAACATGTTGGATCTGCTTATTTTCTCATACTTTTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-356 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000190904

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001651 lncRNA downstream 661512 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 661512 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 723510 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00003340 lncRNA downstream 1220047 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001627 lncRNA downstream 1320391 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00001676 lncRNA upstream 24368 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003342 lncRNA upstream 91681 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001690 lncRNA upstream 225533 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003343 lncRNA upstream 289240 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 823306 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00001670 mRNA downstream 1574 10636064 ~ 10640748 (-) True XLOC_001041
TCONS_00001667 mRNA downstream 21977 10486882 ~ 10620345 (-) False XLOC_001040
TCONS_00001668 mRNA downstream 21977 10509577 ~ 10620345 (-) False XLOC_001040
TCONS_00001666 mRNA downstream 64309 10486093 ~ 10578013 (-) False XLOC_001040
TCONS_00001665 mRNA downstream 168692 10462692 ~ 10473630 (-) True XLOC_001039
TCONS_00001675 mRNA upstream 19963 10667447 ~ 10669436 (-) True XLOC_001043
TCONS_00001677 mRNA upstream 136186 10783670 ~ 10806625 (-) True XLOC_001046
TCONS_00001678 mRNA upstream 162120 10809604 ~ 10821584 (-) False XLOC_001047
TCONS_00001679 mRNA upstream 166724 10814208 ~ 10821584 (-) True XLOC_001047
TCONS_00001680 mRNA upstream 176867 10824351 ~ 11075405 (-) False XLOC_001048
TCONS_00001669 other downstream 21863 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001662 other downstream 369597 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001661 other downstream 570891 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001660 other downstream 570900 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001657 other downstream 573789 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001683 other upstream 177176 10824660 ~ 10841378 (-) False XLOC_001048
TCONS_00001684 other upstream 177176 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001689 other upstream 222633 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001691 other upstream 245838 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001692 other upstream 253582 10901066 ~ 10908621 (-) True XLOC_001048

Expression Profile

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