RNA id: TCONS_00001675


Basic Information

Item Value
RNA id TCONS_00001675
length 766
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_001043
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10667447 ~ 10669436 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAAAGCTTACTTGTTTTTATACGCAGTTTATTCTTCGGAAATAGTGGCACGAGGAGACACGGCTGTTGTGTTTGGTCAGGATGCTTCTCTCTCTTGTACTCTGCCGTTCGTGTCCGGCGTCAAACAGGTGACATGGCAGCGGGTGCGTGCGCAGGATGTACACACTCTGGCCACGTTCAGCGAGCGCTTCAAGGATAATGTGGATGAGGACTTTGTCGGAAAGATAATTTTCCAAGCATCGTTTAATTCAACAACTATTGAGATCAAAAACACAACATTTGAAGATGAGGCTTGCTACATTTGTTCCTTCAAATTGTATCCAACAGGACCCAAACGAGAAACCTTGTGCGTCACTGTTAAAGGTATCTCAGAAATAACAGCAGCAGTGAATCCTGCAGACACTTCTGACACAGAAGTTGTGGTTTCATGTTCAGCCACTGGTAAACCAGCTCCAACAATCCAGTGGAAATCCAGAGAACAAGAGCTGAAGCACTTCAGGTCAGATGATTTCACAACCCACAACAAAGACAGCTCAACCACTGTTACAAGCAACATCACACTTCCGCTATCCCAGTTTCATGGCAAGTACGTGGAGTGTTTGGCTCAGAGTGACGACTATGAGAGGAGTGAAACAATCTACATACCTCGACAACAACATCCTGATGAAGaTGCATCAAGAAATTTCATCATCACATTTTCGGTCCTCGCTGTCATTGCTGTTGTGGTTATTCTCATTACTGTCATCTTTATTTACTGCAAACGAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-76 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD200 (CD200 molecule).

Ensembl:

ensembl_id ENSDART00000152421

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001651 lncRNA downstream 686637 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 686637 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 748635 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00003340 lncRNA downstream 1245172 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001627 lncRNA downstream 1345516 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00001676 lncRNA upstream 2416 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003342 lncRNA upstream 69729 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001690 lncRNA upstream 203581 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003343 lncRNA upstream 267288 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 801354 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00001673 mRNA downstream 19963 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001672 mRNA downstream 19963 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001671 mRNA downstream 19963 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001674 mRNA downstream 20140 10643541 ~ 10647307 (-) True XLOC_001042
TCONS_00001670 mRNA downstream 26699 10636064 ~ 10640748 (-) True XLOC_001041
TCONS_00001677 mRNA upstream 114234 10783670 ~ 10806625 (-) True XLOC_001046
TCONS_00001678 mRNA upstream 140168 10809604 ~ 10821584 (-) False XLOC_001047
TCONS_00001679 mRNA upstream 144772 10814208 ~ 10821584 (-) True XLOC_001047
TCONS_00001680 mRNA upstream 154915 10824351 ~ 11075405 (-) False XLOC_001048
TCONS_00001681 mRNA upstream 155217 10824653 ~ 10885339 (-) False XLOC_001048
TCONS_00001669 other downstream 46988 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001662 other downstream 394722 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001661 other downstream 596016 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001660 other downstream 596025 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001657 other downstream 598914 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001683 other upstream 155224 10824660 ~ 10841378 (-) False XLOC_001048
TCONS_00001684 other upstream 155224 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001689 other upstream 200681 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001691 other upstream 223886 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001692 other upstream 231630 10901066 ~ 10908621 (-) True XLOC_001048

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_01742156_01744802.mRNA True 801 mRNA 0.41 4 CI01000300 1742156 ~ 1744802 (-)