RNA id: TCONS_00001677


Basic Information

Item Value
RNA id TCONS_00001677
length 2633
RNA type mRNA
GC content 0.45
exon number 24
gene id XLOC_001046
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10783670 ~ 10806625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGTGACGGGTATTGTTGACGTGACTCCAATGGAGGATCAACAGGTTTAGATTAGTTGTTGTGATCAGGATCTGGCTGGGATGGAGGTGGTTCATTCTGCCCCTGAGACGTTCTCCAGGACTGTAAAGAGGAAAAACCCACTTCCTCTAAGCCAACTGCTGGAGGACACCAGAACGATTGCAACTGTCCCTAATCACCTTTTGGAAACAAAGGTGTTTACCACATTGAAGAGTAACAGTGTAGTTCAGGCCGAGCCATCAGAACTGCATTTCAGTGGCTTTGAAGTAGGAAAAGATTATAAGAAGATCCTGaaacttgtCAATGTTTCCTCGGACGTGCTGAGTGTCCACATTTTACCACCTCAGACAAAGGAATTCCAAATAAAGTACACCAAAAAGTGCCGACTAGTCCCGGGTCTTGCTTACACTGTTACAGTGTTTTTTCGACCAGACGAGTGGCGTTACTTTTCTGATAACATTAGGATTCATGGCAAGGGAGAAGAGAACTTACTGGTTCCCGTTCATGCATATCCTGTTATCAATGACCTTCACATCCCATCTCACATTAGTCTTCCCCCAGTGCCGCTTGGACAGAGTACAACTCATGTGATTCCACTAAGCTGCAGTTGTCCAGTAGACTTTGAGTTCCAAGTGCACTGCCTTCAGCCCCATAAGGCCTTTACTGTTAGACCACTTTCAGGGATCATTCCTGCAAATGGAAAGACTGTGTTGAAAGTGACATTTACCCCTTTGCGGTATGGAACTGCGGACATCACACTGCAGCTGATCATCTCTCAGTTCAACTCTAAACCTGTCATCTGGACTGTGACGGGCTCTTCAACACCATACCTGCTGCTTAGTAAGCCGGATGGAAATGGTGACGAGGAAGAGGATTTTGCTGACGAGCAGAAGACTTATGGAAAATATCCGACCCTAACATCCCATCCTAAGCTTAAAATGACTCCCTACTTGGATAAGGGCAGCAAAAAGAAGACCAAACCTGTTCCACAACTCCAGGTTTCCACCACAGATGTCAGCACTCACGCCGGACTGGTTAAAATGCTTCTCCAGCCACAAGACAAAATGAGATTTAAGGACCTCCGGGAGGCCATGTCTTATACCAAGGTTGCAGACCAAACAAGAGAAATGAAGGAAGCTGCGTTTTTAAAGAGGGTCCAACAAAAGGAGGAGAAAGGCAATGCTATTCGATGGCAAGTTGATTTGGGTGATGATCCGTGTTCAACGGAACTAAAACTTAAAATTTTGAAGGAGCAAGATGAGGCAGTTGCTGTATACAAACTAAAATACAGTGGTGAGTCAGTGGCTATTTCCAGACCTTCAACTAAACTTTTCTCACGGAGAGTTTTGCGTCATGTTGGACAGgtcccagcatgcactgctgTTTTCAGCCGCTATGGAACTGGCCAGCTGGAGGTCAGACAGAGAGCGCTCAGACTCTTTCAGCAGGCTGCTCGCAAGGTTGTTCTTCAATGTCGGATGAACAAGAGGCTGGTGTCTCTGAGAGAGCTTGTTCGCAAAACTAGGAGTCAGCAGGGAAACAATGAATCAGaTCTGGATGAGAAGTCCTGCCTTTTTATACTTACTCCAGAAAAAATCAGACCCTTCTCCTTCAAAACCTTTATATCTGAAGACCAGGCTGACAAACCTGCTGCGAAAGCATTTCGTCACGTTCCTGCAAAAACGCCTGAAGCAGATATGAAACTCAGGACTCCATTGTTCACTCTAAAAGTGCCCCAGCAATACAGACTGATGGGTTATCAGCCATTATCTGCCTATGAAGCAGCAGCATCATATATTCCTCCTGAGCTGAGTAGGCCTTTACGCACTGGAGCACAGGACGAGCTGTTTCCTGTGGTGACATGTACATCTGTAGATCTCAGTGAGGATGAGGAAGAGAAAAACCCACAGGAAGATGATAGAGCAGATCTGAGTTTAAATCCCACCCTCAGTTTCTGTGCACCTGAAACACTCCTAAAACCACCCAGAGCTCACCCTTTACGGATCTTTAATCCTGCTCCTCATGTTCATGCCTTCAAAGCAGCTCCGCTTTACCTGGAGACTGACCTGGACTTTTATTTGTGTCCGCTGCCTCGATACACCATCACTAGCGCCAATGTCAGAGGTGTGGACAATACAACAAAGAAGAAAGTTCTAAATAGACAGgATATAATCAAAGGGATTATGACATGGAAGAAGTTTCCCTCTATGGCATTGAAAAGTTTATCCAATATTTCGACTCTAAAAATCGACTGCATCCCACACATGTCTGACATGCTGCCTATGGAGGCTCCTCCAGTGCTTCAGAATCTGCCCGACAATATCAGAGATGAGATTCAGTCTGGAGTGTCTGAGAGCTCGGAGCTCCGTCTCACTCCAGAGATGGTTGAAGCAGAGTTCAGTCTGTCTGAAAGATCTTCAGCCACGTCTGTTAAACAGGAACCAGTTGAAGGCAATAGAGACACACACGGGCAGCTGCCGGAGTCGACACTCACCAAACTGAGAGCAAGAGTGCTGAATAGATTCAAAGACTTCAAATCTACTGGAAAATGAAGATGGGCCTCATCATGTGACCATAAATAGcagttttattataaaataaaatgtagaaaata

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0060271 cilium assembly biological_process
GO:0005929 cilium cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-144 Predicted to act upstream of or within cilium assembly and cilium movement. Predicted to be located in cilium. Orthologous to human CFAP221 (cilia and flagella associated protein 221).

Ensembl:

ensembl_id ENSDART00000139749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003342 lncRNA downstream 43229 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 101521 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001651 lncRNA downstream 802860 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 802860 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 864858 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00001690 lncRNA upstream 66392 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003343 lncRNA upstream 130099 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 664165 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003345 lncRNA upstream 886532 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 904918 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001675 mRNA downstream 114234 10667447 ~ 10669436 (-) True XLOC_001043
TCONS_00001673 mRNA downstream 136186 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001672 mRNA downstream 136186 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001671 mRNA downstream 136186 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001674 mRNA downstream 136363 10643541 ~ 10647307 (-) True XLOC_001042
TCONS_00001678 mRNA upstream 2979 10809604 ~ 10821584 (-) False XLOC_001047
TCONS_00001679 mRNA upstream 7583 10814208 ~ 10821584 (-) True XLOC_001047
TCONS_00001680 mRNA upstream 17726 10824351 ~ 11075405 (-) False XLOC_001048
TCONS_00001681 mRNA upstream 18028 10824653 ~ 10885339 (-) False XLOC_001048
TCONS_00001682 mRNA upstream 18028 10824653 ~ 10914523 (-) False XLOC_001048
TCONS_00001669 other downstream 163211 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001662 other downstream 510945 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001661 other downstream 712239 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001660 other downstream 712248 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001657 other downstream 715137 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001683 other upstream 18035 10824660 ~ 10841378 (-) False XLOC_001048
TCONS_00001684 other upstream 18035 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001689 other upstream 63492 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001691 other upstream 86697 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001692 other upstream 94441 10901066 ~ 10908621 (-) True XLOC_001048

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_01812173_01822492.mRNA True 2214 mRNA 0.46 21 CI01000300 1812146 ~ 1822492 (-)