RNA id: TCONS_00001679


Basic Information

Item Value
RNA id TCONS_00001679
length 587
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_001047
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10809604 ~ 10821584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCGGGATTCCACTCAGCTGTCAAGACGTTGTTATGTTAGACTGATTTATGATGGTGATTGTGATGCTGTCAGTCATGATCGCGAAGCTCCTGATTCTCACACTCTTTGCGACAAAGGATGGACACCACATCTATGCTGAAACGAAGCTGGCTGCACCTCAGAACGTGAAGGTGGTCTCCATCAACATGGGTGCAGTTGTCGAGTGGACGTCTCCACACAATTCCATCAGGAACATGACGTACACTGTAAGATATGTTCCTTGCGATTGGGGAAATGTCTCTTCCATCTGTGTGAAAACCACAGAGCTGAAATGTGATGCGGGAGTTTTGCCGTATGCATTTGGGTGCTACATTTTTCAAGTGCGGGCAGAGAAAAATGGGATGTTCTCTGAATGGGCTAAAGCACCCAAATTTATACCTCATCAGCACACTATCATAGGACCTCCTGCTGTGCATCTCGTCATCCAGAATAACAGTCTGGAAGTGACTGTTCGAGCACCCATTCTGAAAATCGGCAAACTTTCCACATTTTTTTCACAAGTGACCTACACCATCAAACACCGGAtcgaaggcattgaagatgag

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071120-6 Predicted to enable cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000162137

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003342 lncRNA downstream 73767 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 132059 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001651 lncRNA downstream 833398 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00001652 lncRNA downstream 833398 9979294 ~ 9980810 (-) True XLOC_001033
TCONS_00003341 lncRNA downstream 895396 9916376 ~ 9918812 (-) True XLOC_001031
TCONS_00001690 lncRNA upstream 51433 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003343 lncRNA upstream 115140 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003344 lncRNA upstream 649206 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003345 lncRNA upstream 871573 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 889959 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001677 mRNA downstream 7583 10783670 ~ 10806625 (-) True XLOC_001046
TCONS_00001675 mRNA downstream 144772 10667447 ~ 10669436 (-) True XLOC_001043
TCONS_00001672 mRNA downstream 166724 10642322 ~ 10647484 (-) False XLOC_001042
TCONS_00001680 mRNA upstream 2767 10824351 ~ 11075405 (-) False XLOC_001048
TCONS_00001681 mRNA upstream 3069 10824653 ~ 10885339 (-) False XLOC_001048
TCONS_00001682 mRNA upstream 3069 10824653 ~ 10914523 (-) False XLOC_001048
TCONS_00001685 mRNA upstream 3167 10824751 ~ 10847753 (-) False XLOC_001048
TCONS_00001686 mRNA upstream 3167 10824751 ~ 11075403 (-) False XLOC_001048
TCONS_00001669 other downstream 193749 10619816 ~ 10620459 (-) True XLOC_001040
TCONS_00001662 other downstream 541483 10270247 ~ 10272725 (-) True XLOC_001037
TCONS_00001661 other downstream 742777 10066879 ~ 10071431 (-) True XLOC_001036
TCONS_00001660 other downstream 742786 10066231 ~ 10071422 (-) False XLOC_001036
TCONS_00001657 other downstream 745675 10063874 ~ 10068533 (-) False XLOC_001036
TCONS_00001683 other upstream 3076 10824660 ~ 10841378 (-) False XLOC_001048
TCONS_00001684 other upstream 3076 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001689 other upstream 48533 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001691 other upstream 71738 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001692 other upstream 79482 10901066 ~ 10908621 (-) True XLOC_001048

Expression Profile

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