RNA id: TCONS_00001694


Basic Information

Item Value
RNA id TCONS_00001694
length 5496
RNA type mRNA
GC content 0.42
exon number 23
gene id XLOC_001052
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11086957 ~ 11104805 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTTGGAGTTGAGCAAGAGGAGCAAAAGGAAGAAATTGCCAAGCCTGTAGAGAAGAGGAGAAATTCACGTAGAGTGAGTTTTGCCACTACGAATAATGTGCGAGTCTTTACCAATGAGGCAAAGAATGAATCTCCTGTTCTGGGATCCATACAAAACTTACATGAAGAGCGGCCTGATGAAAAGATCCTGCGTTTTGCGGATGAGGGAAGTCACCAAATTAAAGGCCTGGAAACTTTGTTGCACACTCCTCTTTATCTAACCCAGAATAAAGAAAATTTCTTCTCTGATCCGGTCTTACAAGATGACTATGTAGATAGAACAATACTACTTGGTGAAGATACTGGATACATGGATATTACTCACAGTCACACTATCACATTTGATAAGGATTATGAAATCAAAGAGGAGGCAAACCAGGATGTTAGCTTCAAAGTGGCTCAGACTGTCTGTGGTGATTCGAATATTCCAAGTCAGAAAGCAGACAAGAAAAATGTTTCAATGGACTCAGACTTCAGTGCTTTTCTCGCAAGTATGCACTTACCCACTGTAAATACTGTTAAGCTCCAAAAATCAGAAAACGAGCTCAATAATGCCTCCGGTCCAGCGAATACAAGCATTTCAGAAATTGATAAGGAAAATTTCTTGCCATCTTTTTTGACGAAACCACAACCAAGCAGCAAGTGTCAGCTACTACAACCCCGAGGACTTCAACGCAGACGTTCTCGAGTTTCATTCATTGAAAATGACGAAAGTGGGTCAACAATGGGTCGCACTGTTGTAACAGAAAACATTGATAGTGCACAGTCTTTTACACCCTCAGTTCCTAAAAACCCTAGAAGTGTTCCCATCATGACATCTGCTTTTCCAGATGTGTCAGATGACATGGAGTTCACTGCTCCAGTCAATGCTAAAGTTACAGGAAATATCACTTGCGGTGTCCAGGCTGCTCTGGATCAGAATAGATCACATTATTTCTCTGAAGAAGACAATGCAATGGAGATGACGGGGGTATCTGATATATCCGTTCGAAATAAAGACTACACGGTGAATATGATGGAACAAAGTCAGCCTTCAGTTCCTAAAGTAAGAAGGATGTCCTCCTTGACTGTCATTGGAAATGGAGAGATAACAGATCAAAGCAATGCTGGTTATTTTCAGGGCAATCTATCAGTAGCCCAAACAACAGATTGTGATAATATGGAAATGACTGAAGCTTTAGATGTTTCTCTTCAAGACAAAGAGAAAGCTTTGTTTCCCAAAGTAAGCAGGAGGTCCACATTTGATGTTTTCGGAAATGGAGACATAGTGCAAAACAAATCTAACAGCAGCTTAATGGTTCCTCCTGCAAATTCCGATGATATGGAGATGACTGAGGTTATTGATCTTGAATCCAAACCATCAGTTGAAAACAAACTGCTTCACGGCTCAAGGAAGAGTTTGCCGCTGACATCTATATCCAGAAAGGTTCAAGAAGATAAGCATACAAGCATTATGAAGGAGAACGGTCTGCATCCCATTCCTACTGTAAACAGGAAGACCTGCTTTAATGTTGCTGAAAATGGAATCGTACTGGATTACAATAAATCAGGCCACCTCTCCATAGCCCAAGACGACAATTCTGGCGATATGGAAATCACAGAGTGTCGAACTGATTTTCTCGAAATCAAACAATCAACTGAAAACAAGTCATTTGGTAGCTTCTGGAAGAATTTGCCTTCTTCATCTTCATCCAAGACAGTTGGAGAAGACGAGCATACAGGCAGCGTCAAAAAGGAAGCTCTGTGTTCAACGTCTAGTGTAAACAAGATGCCCTGCTTTAATTCAAATTCTGATGATATGGAAATGACACAGTGTCACACTGTTTTTCTTCAACCTAAACATGTCAGTGGGGATGAATCATTAAGTGTTCCAATAAAAAATGGACCTCTTACATCACTATCTGGAACTGAAGGCGGGGATGAGATGGACATGACTCAAGTACCCACTGGGCGTATAATACTAAATGGTCATTCTTCCTATAAAAAGGAAAAAGGTGAAAGCATTCTGATACCTGCTTCAGCTACATCACCTGTGCATAATAAGAGTGACTATATGGACTTGACATGTGTACAAAGTACTTTTGCAGAGACTTCTCTCCCATGTCCAGACGAAATGGAATTTACAGCATGCGTCGCTGACATTGCCTCAAACCGAACAGGAAGAACTGTGGATATCACAGATATAAGAGCGCCATTCTCTGCCAATCAAACCGTCATCGTGGTTGAACCTATGGAGATGACTGAAGTACATATGGCACCATTCAGTGAGCGAAAGCATAAAGCTTTTATGACTCGAAGAAAGTCAGGAGCAAGGATGATGTCCTTGATGTGCAATTCTGGAAACACTGAAGCTGATAACTGTCAATTTGATTTCTCCAACTCTGATAACATGGACATGACACAATGTCAGACTGCAGTGCTGGAGGCTGAAACTTCCAAGAGGGCCACACCATTCAACAAATCAAGGAGGAATTTGAACAGTGCATCCTGCAGTCCTGATGGTATGGAGATAACTCAGCCACTCACTGGCAAAATAGTGTTAAAAAGCTTTGCATCTAATGAGGAAAGTAAGCATCAGCAAAATCCTTTGCCTGAAGCCCAAAGTTGTCAAATGCAGAACGAGTCTCAGTGTATGGAACTGACATGTCAAGCCAGTGCATCAAATCTAGCCATTCCCTATGTTGATGATGAAATGGAGCTAACAGGATGCAATACGATTGCAATGGACTCAAAAAGCACATTGGCATCAAGTGCTGCGGAGATCAAAGTGAATGAAAGTGCACTTTGGGCATCAacaactgtttctaaatgcacAGTGTCAAGTGAAGAACAAAATGAGGTGAGTGAAGCTGCCAACTGTGCTAATAGCAGTGTTTTCCCCTCAAAGGATCTTTTTGATCTTGGTGGAAAAAGCGTTAAATGCAGCAACATGGAGACAACATCCTACATACTACCCGATATGCAAGTGGACAAAAATTGTGAAACGGCTCTCCCAAGCAATGTGATGGCGAACGATGAAGATGATATGCAAGTCACAAAGCCCCTAACATTGCCTATTGAAATTGAGCAAACGTTTTCATTTAACCAGAACGAAGAACCCAATACATCCTCCGGTTTTAGAAATGACAAAGAGGGTCATGCTCATAATGCTAAAGCAAGACGAAGAAGTTTAGCAGACTTTCAAATGGAGCTTCATAACATGTCACAACGTATCCTCGAAGAGCCAAATTTAATGACAGTAAGCGCAACTGCGCCTCTGCCTTCTTGCACACTCTCAGAGAACGTGCAGAATGAAATGGGAAGTTCTGCCGAGCCTGCTTCAAATGTCACACCTGTTGTCAAGCAGAAAAATAATTCTGCGCAAAGTCAGAAGACCACACCTTTTAGTCTTAACAAAAAATCCTTTTCCTCAAGGATGTCATTGTGTGGGGTTGTTCCAAAGCTACCAAAACGAGCTACAGCTTTCACTCCCAACAAATCCCTGCCCATAAGTTTAAATGGTTTACCGTGTCTCGAGCTAGAGAAACATTTTGAAGTTGCTGAACAAAAAAGCAATCAAACAGTCGATATTAACGATGAAGAGTTCCCTGAAATGAGCAGTGAAGAAGACCTCTCGGGGAGTCTTGAAAATTGGCCAGTTAGTAAGCAAGATGAACTGGATGAATCTTTGGCTGTACCCATGAAAGAAGAGTTTTTAATAGACGATGTCTTCGAGTCAGGCACAAGCCCTTCTTTTAAAAGGCCACATCCAGAGGAAGAACCTATTACACCAGAACAAACCAAGAAGACCTGTGTTTCTGACATGGGGTCTGACTGTCATGAAGCTGCCGTACAGTGGGAAGGTAATTTTACAAGGCATGCCGCTCAGAATCCCAAGGCAAAGACAATTGAAGATACAGGAGTCTCTGAATCCACTCTCAGGCACTCGCAGTTTGACTCTCATATGGACGGCATGCAGGATAATCTATTTGATTTTAATAAGAAACTTGAGGACGGAAGCATCACAGTGAACGAGTTTCTTAGCCACTTTGGCATCAAATTCGTCATCCACAGATCTAGACCAAGTGCTCTGCCTGTCAGGTGTGGCGCTGGTGAGACACGCACCATCGAAGATTTGCTGAAAGAAAAATACATAAGCCACCCCAAGCAGAGAGTATATGAGCAAGACTGTAAGAACATTACAGAAATAGTGGAGAGACTTAAAGAACAAATGTCTGCACAAGAGAAATCCCTGAGAAGCATCAATGGAGCCCTTCAACAAGAGATATGTACTCTCTCTGAAGAACAGTTAAAAAGCTTTGGATCCAAGTTGAAGGAGCGAAGGGCTTATTTTGGGAAGAAAAGCAAAGCAGTTTCTCATGAAATGAAAGGAGTGTTGTACTCTGAGCTCATAAAAACAACACAGGATGCAAAACTGAGCCTGATATCTAAAATCAAAGAGACAGATGAAATGATTGAAGACTTGGATGGCTGCATTAAAGATTTAGAAACCGATCTTGCGTCAGTTGATGCCATGATCACAGGGGATCGTCTTGATCTTCCTCAAGCAGGACCAGCCTTAAAAGCCAAGGAAGAAGATTTGCATCGACTCAATTCAGCTGTCACTTTCAAAGAGAGGGAAATTGGTGAGCTGGAGATTCAGCTGAAGACTTTGGAGAGCCAACAGGAGAAGCTGCAAGGGGAATCCAGTAGCCTTAAGAGTCATCTGGCAACtttaaacagTTTGAACGAGTGGCGTCTTGAAGCGACAGATGAAACAGGGGCTTTGTTTTCCTTCCTTCATAAAACTGTGCATCTGCAGGTGAACCTTCAAACACCTGCTGGGAAGGAATGGATGACTGAGGATGTGGAGAGAAATGTAGATGTAGTCTTCCAGTTGCAGCTGGATGGACAAAAGTCAGAATGTCATGCAAGCATGATTCATAATTTACTCGCAACGAAGATTGAGTCTCAAAGTCATTGGAAACAGAGGTACACAACAACCAGACATATACCAGAGCTCTTGCATACCATGAGTTTGGTGGTGGGTCGTCTCAGGCTTTTGGGTGAGGAGATTCACCGGTTGAAGAAGTGGGGAGGTTTGAGGCTTAGAATACTGAAAATCACTTGTACGGATACACGAGTTCATGTCATCTTCTCAAGTCTGAAATCCTTTGAAAAGTTTGAGCTGAGTCTGACGGTCACTCCAGACTATCCCTTTGGACCACTTCACATACAGGACTTCAAAAACCACATGGGAAACACAAGGTTGGATCAGCTCGAGGAGATCATATCGTCAGTTAAACCAGCCAAGAACTATCTGTCAAAAATCCTCAAGAAGATCCACGATGACCTCCTGTGCTAGGACCTCAGGTCTTATTGTTTACTCTGTTCtgtcttttaaatgtttgtaCATGTTTGTATTATCCCAAAATAAATGTGGCCGTAAACTACAAGTTTGCCGGcattctttaaat

Function

GO:

id name namespace
GO:0034501 protein localization to kinetochore biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5437 Predicted to be involved in attachment of spindle microtubules to kinetochore and protein localization to kinetochore. Predicted to act upstream of or within cell division. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly and primary autosomal recessive microcephaly 4. Orthologous to human KNL1 (kinetochore scaffold 1).

Ensembl:

ensembl_id ENSDART00000147648

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003343 lncRNA downstream 149142 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00001690 lncRNA downstream 201619 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003342 lncRNA downstream 346516 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 404808 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00001651 lncRNA downstream 1106147 9972696 ~ 9980810 (-) False XLOC_001033
TCONS_00003344 lncRNA upstream 365985 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003345 lncRNA upstream 588352 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 606738 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001712 lncRNA upstream 835356 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00001715 lncRNA upstream 960351 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00001680 mRNA downstream 11552 10824351 ~ 11075405 (-) False XLOC_001048
TCONS_00001686 mRNA downstream 11554 10824751 ~ 11075403 (-) False XLOC_001048
TCONS_00001682 mRNA downstream 172434 10824653 ~ 10914523 (-) False XLOC_001048
TCONS_00001681 mRNA downstream 201618 10824653 ~ 10885339 (-) False XLOC_001048
TCONS_00001688 mRNA downstream 201688 10853315 ~ 10885269 (-) False XLOC_001048
TCONS_00001695 mRNA upstream 19941 11124746 ~ 11372458 (-) False XLOC_001053
TCONS_00001696 mRNA upstream 20297 11125102 ~ 11291324 (-) False XLOC_001053
TCONS_00001697 mRNA upstream 235229 11340034 ~ 11372456 (-) False XLOC_001053
TCONS_00001698 mRNA upstream 235232 11340037 ~ 11519934 (-) True XLOC_001053
TCONS_00001699 mRNA upstream 490993 11595798 ~ 11596829 (-) True XLOC_001055
TCONS_00001693 other downstream 24310 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 178336 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 183071 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 216716 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 237006 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 1571182 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 2678125 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 2771000 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 2969502 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 3410640 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_01963369_01973641.mRNA True 6179 mRNA 0.40 21 CI01000300 1963284 ~ 1974476 (-)