RNA id: TCONS_00001704


Basic Information

Item Value
RNA id TCONS_00001704
length 1032
RNA type mRNA
GC content 0.42
exon number 1
gene id XLOC_001059
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11641482 ~ 11642513 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGAATGCAGAAGCTCcatcacttttgttttcttttgggaGCGGTATTCATCACATTGTTTTTTATAGTAGTCTTCTGGGATGAGGTGAGAGTTGGAACTTACCAGCACATGGATTCATCAAAAAATCTGAAACAGCGTCAAGCACATCGTAAACATCTAATAAACAAGCTTTGTTTGGCCAATAGCAGCCTGCTTTTCCGAGATAAATTAATCACATTTGACCAGATTCCCAACAAAGCTCTGGATCATCTCATTGTGGACGATCGTCACCGTGTGATTTACTGTTTTGTACCCAAGGTAGCTTGTACTAACTGGAAGCGAGTAATGATTGTGCTCAGCCAGAACCTGAAGGCACCTGATGGAGCTCCATATCTGCATCCTCTTGACATACCAATAGAGGTAATCCATAATTCTACAGTGCATAAGACATTTAACAACTTATGGATCCACCATGGTCGATACGCTCGTCCTCTGATGCATCAAAAGCTGAAGAACTACACTAAGTTCCTTTTTGTACGGGATCCGTTCGTGCGCCTTATTTCTGCTTTTCGAGCCAAATTTAATAGGCCAGATGAGTACTTCTACTCCAATTATGGCTCCACAATGCTTCAGCGTTATGCTAATATTTCACACCCCCCTGCTTCGGCTCAAGAGGCCTTCAGTGCAGGTATCAGACTGTCCTTTACTCACTTTATTCAGTATCTGTTAGATCCACAGACTGAGAAGGAGAAGCCGTTTAATGAGCATTGGCAGCAGATTCACAGACTTTGCCATCCATGTCAAATTGACTATGACTTTATTGGGAAGCTAGAAACTCTTGATGAGGACACAGAACATTTGCTTAAGATTCTTGGACTGGATAAACATATTCACTTTCCTCCAGGAAATGAGAACAGGACTGCGGTAGACTGGGAGCGAGAATGGTTTGCAAACATTTCAGTAGCACACAGGAGAAAGCTGTACAGTCTTTATGAAACCGACTTTAAGTTATTTGGATATGATAAACCTGAGACACTTCTGAATGAGTga

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-144 Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and pectoral fin. Orthologous to human CHST12 (carbohydrate sulfotransferase 12).

Ensembl:

ensembl_id ENSDART00000115316

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003344 lncRNA downstream 124129 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003343 lncRNA downstream 703667 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00001690 lncRNA downstream 756144 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003342 lncRNA downstream 901041 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 959333 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003345 lncRNA upstream 50644 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003346 lncRNA upstream 69030 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001712 lncRNA upstream 297648 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00001715 lncRNA upstream 422643 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00003347 lncRNA upstream 463134 12105647 ~ 12109216 (-) False XLOC_001068
TCONS_00001703 mRNA downstream 9848 11626252 ~ 11631634 (-) True XLOC_001058
TCONS_00001702 mRNA downstream 14193 11626252 ~ 11627289 (-) False XLOC_001058
TCONS_00001701 mRNA downstream 25187 11615273 ~ 11616295 (-) True XLOC_001057
TCONS_00001700 mRNA downstream 34420 11606010 ~ 11607062 (-) True XLOC_001056
TCONS_00001699 mRNA downstream 44653 11595798 ~ 11596829 (-) True XLOC_001055
TCONS_00001705 mRNA upstream 28366 11670879 ~ 11689525 (-) True XLOC_001060
TCONS_00001706 mRNA upstream 139031 11781544 ~ 11850353 (-) True XLOC_001063
TCONS_00001707 mRNA upstream 212197 11854710 ~ 11878845 (-) False XLOC_001064
TCONS_00001708 mRNA upstream 212931 11855444 ~ 11878845 (-) True XLOC_001064
TCONS_00001709 mRNA upstream 260066 11902579 ~ 11973341 (-) False XLOC_001065
TCONS_00001693 other downstream 578835 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 732861 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 737596 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 771241 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 791531 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 1033474 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 2140417 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 2233292 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 2431794 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 2872932 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

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