RNA id: TCONS_00003345


Basic Information

Item Value
RNA id TCONS_00003345
length 499
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id XLOC_001061
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11693157 ~ 11695392 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttACTTAAAAATAGGCCAGTGTGCCGAACTCTCACAGTGAAAGCCTCGTTTCTTCTGTCCGGTCAGGATGTCCCAGATGATGATGGCTTGAGGGTCTTCTTTAGTGTCCATCAGTGGGCTGAATGTCACCACATACCTGCCAGATATTTTGAATCCGTTGTTCTCATCCGTAACTCAGAAATAGCAGCTCTTGCATTCTCTCAGAGCTTTACCTTTCGCATGGGGAGAAGTCGATGAGAGAGACGCCCTGATGGCTGAACCGCTGGATCTGCTTAAACTTCTCTCCACCCCACAGTGCAATTCCCCTTTGGTGAAAGGTGAGAGGTGGTCTCCTTTGGGAGACCAGCGGACATAAGTCTCTGTCCAGCGCTCTCTCTCTTCCACCAGTATCGGCTCCTTTGGGTCATTCGAGAATATGGCGGTTCGCTCTCCCGACTCATAGATTACACTGTATTGATCACGACAGTCTGGATCCTCAAGCCAGTGCCTCATGTTGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003344 lncRNA downstream 175804 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003343 lncRNA downstream 755342 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00001690 lncRNA downstream 807819 10873017 ~ 10885338 (-) False XLOC_001048
TCONS_00003342 lncRNA downstream 952716 10739165 ~ 10740441 (-) True XLOC_001045
TCONS_00001676 lncRNA downstream 1011008 10671852 ~ 10682149 (-) True XLOC_001044
TCONS_00003346 lncRNA upstream 16151 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00001712 lncRNA upstream 244769 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00001715 lncRNA upstream 369764 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00003347 lncRNA upstream 410255 12105647 ~ 12109216 (-) False XLOC_001068
TCONS_00003348 lncRNA upstream 741466 12436858 ~ 12441010 (-) True XLOC_001072
TCONS_00001705 mRNA downstream 3632 11670879 ~ 11689525 (-) True XLOC_001060
TCONS_00001704 mRNA downstream 50644 11641482 ~ 11642513 (-) True XLOC_001059
TCONS_00001703 mRNA downstream 61523 11626252 ~ 11631634 (-) True XLOC_001058
TCONS_00001702 mRNA downstream 65868 11626252 ~ 11627289 (-) False XLOC_001058
TCONS_00001701 mRNA downstream 76862 11615273 ~ 11616295 (-) True XLOC_001057
TCONS_00001706 mRNA upstream 86152 11781544 ~ 11850353 (-) True XLOC_001063
TCONS_00001707 mRNA upstream 159318 11854710 ~ 11878845 (-) False XLOC_001064
TCONS_00001708 mRNA upstream 160052 11855444 ~ 11878845 (-) True XLOC_001064
TCONS_00001709 mRNA upstream 207187 11902579 ~ 11973341 (-) False XLOC_001065
TCONS_00001710 mRNA upstream 207190 11902582 ~ 11973341 (-) False XLOC_001065
TCONS_00001693 other downstream 630510 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 784536 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 789271 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 822916 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 843206 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 980595 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 2087538 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 2180413 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 2378915 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 2820053 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

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