RNA id: TCONS_00001715


Basic Information

Item Value
RNA id TCONS_00001715
length 2538
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_001067
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12065156 ~ 12068877 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCGAGGTGTTCATGAAGATTTGTCTTACCAGATCAGCGTTAAGTCAAACGAGAActtaaatgaaaatgttaataatatcAGTCCAGCGTTTCGGTTCTGTTTTGTGTTCAAGAGCTATGTTGTGGTTCTTCTCTTCTTCTTTGGATATTTCGCACCACAGAACCAGCATCGCCATCTTGTGGCATTTTCAATGGTTCCATGGCTTTGCTCTCGCTCATATACCCTCATGTCATGTATAAACATAAATTCACGTATAAAGAACTAAGTAGccgtatttttattttgtatgcaaaCCATAAGCGTAGAATGTACAGATATTTGCATGAATATGGACGTGTGTTGTGATTCAAATTCTGATGCAAATAACGATCAATGTGTGTAAGAAAGATGGAGGACAATCGTCAGAAAATTTTTGTCAACAAATCTGgcaatttaataatatttgtaacgACTGTAGAGAATAAAACAAAGCATATTTCACCTACTACAACTGAGgATGCACCCGATGAAGCTTGCTTTGAAAGCACCAGCCAATCAGGAAGAGAAGAAGGAGAAATCCCAGAGGCCTCTCACACTTTAACATTGCCATTTCATCTGCTGGAGAGTGTTGTTGAAGGACTGCTGGAAAAACTCGACATTTTGGACACTGATCTTTCTGAAACACTTGTTTCCAGTCTAATAAAGGCACTGGCAAGCCTGGCAGGGATTAATGTTGATGTCTGCACCGCAGGCAGTTTTACAGAAGACACTGTTTTACAGATCAGAAATGAAGCTCTTGGCATCCTGGCACATAAGGTCAACGTGAAGACAATGAAAAGGCATGAAAACAATCTGGTTGTGGGCTACGTCACCGCTGTCCTATCTGCAGCCATCATTAACTACACGGTCATGCATCCTGAGGCACTAATGAGTTACTCGAATGAAAGCCTAGCCGGATCAAATGCTGAGTTTTCTGTCAAGAAAGATCTGATGGAGAGATGTGCTGCATCTCCATCTACCTGCAAAAGCATCAGTGAGATGTACCTGCATTCTGACCAGAAGGAAACAGATGAGAGATGCAGTGGAGACCAGAAAGCGGGCGCTGATACATCTCCTGATTCAGCTCTCATAGACGTCAGGCCGAGAGTGAAGAGAGGCATTCAGGGCTCTCTGTCCAAACTGTTCTCCTTCAAGAGCAGGGCCTTTCAACGAGTGACTCCTTCGTCTGAGGAAATCTGaagaaacattaataaaatgtgattatttgatgtaaaaaaaagtgttttaaaccatttttatatgttttgttttcaactaaaacattaattctttcattttcttgtcggcttagtccctttattaatccggggccgccacagcggaatgaaccggcaacttatccagcatgtttttacacagcggatacccttccagccacaacccatcgctgggaaacatccacacacactcattcacacatatacactacggacaattcagccttaccaattcacctgtaccacttgtcttcggactgtgggggaaaccggagcacccggagaaaacccacgcgaacgcagggagaacatgccaactccacacagaaacgccaactgacccagccgaggcttgaaccagcgacctttttgctgtgaggcaacagcactacctactgcacccctGCGTCGCCTcaactaaaacattttaagttaaattaaagtagcctgggcggcacggtggctaagtggttagcaccagggtgtgaattacaggggggtttggggggtcAAACCCCCATAATTTACGCTTGATTCCTCCCTGAAGGACATCataacaagatgtatgggggtcTGCCCTTTAAGAGATATGAAATAGTTTGTTCTGtgtcttaaatattaataattaaaataatatataatttaaatatacatttgaacaCTCCTGTAATGGACcaaaccattgtgaatgcatgctTGCGccaaatttattttttagtttgaaaCTGGCAAATGTAAAGCACCGGCAGACAGCGTGAgtgttcacaaaacatgtttcccctaatatgtttgtttaatatcaCAATGGGGGattcacagtggtgcagtgggtagcacgatcgcctcacagcaagaaggtcgccgtgTCGAGCccaggctaggtcagttggcatatctgtgtggagtttgcatgttctccccatgttcgcatgggtttcctctgggtgctccggtttcccccacaagtccaaagacatgcgctataggtgaactgaataaactaaattgttcgtagtgtatgtgtgtgtgtgtgtgtgtgtgaatgagtgtgtatggatgtttcccagtactgggctgcagctggaagggcatcaactgtgCAACAAATGCTTGATAacctggcggttcattccgctgtggtgaataaagggactaagtcaaaggaaaataaatgaatgaatataaaatgtgAATGTGCGAAAGTTAACTAATCAAGATGTCATTGTTTGCCAAACTTCTAGTATAGGCTGCTTATTAAATATAAGtatgtgtctgtgttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001712 lncRNA downstream 91822 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00003346 lncRNA downstream 350793 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00003345 lncRNA downstream 369764 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003344 lncRNA downstream 547803 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003343 lncRNA downstream 1127341 10936724 ~ 10937815 (-) True XLOC_001050
TCONS_00003347 lncRNA upstream 36770 12105647 ~ 12109216 (-) False XLOC_001068
TCONS_00003348 lncRNA upstream 367981 12436858 ~ 12441010 (-) True XLOC_001072
TCONS_00001729 lncRNA upstream 483423 12552300 ~ 12564530 (-) False XLOC_001073
TCONS_00001730 lncRNA upstream 495314 12564191 ~ 12679517 (-) True XLOC_001073
TCONS_00001732 lncRNA upstream 606547 12675424 ~ 12677877 (-) False XLOC_001074
TCONS_00001713 mRNA downstream 357 12061284 ~ 12064799 (-) False XLOC_001066
TCONS_00001714 mRNA downstream 441 12061923 ~ 12064715 (-) True XLOC_001066
TCONS_00001709 mRNA downstream 91815 11902579 ~ 11973341 (-) False XLOC_001065
TCONS_00001710 mRNA downstream 91815 11902582 ~ 11973341 (-) False XLOC_001065
TCONS_00001711 mRNA downstream 151986 11907309 ~ 11913170 (-) False XLOC_001065
TCONS_00001716 mRNA upstream 37024 12105901 ~ 12109216 (-) False XLOC_001068
TCONS_00001717 mRNA upstream 38810 12107687 ~ 12126535 (-) False XLOC_001068
TCONS_00001718 mRNA upstream 38810 12107687 ~ 12126625 (-) True XLOC_001068
TCONS_00001719 mRNA upstream 72999 12141876 ~ 12160981 (-) False XLOC_001069
TCONS_00001720 mRNA upstream 76766 12145643 ~ 12161148 (-) True XLOC_001069
TCONS_00001693 other downstream 1002509 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 1156535 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 1161270 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 1194915 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 1215205 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 607110 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 1714053 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 1806928 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 2005430 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 2446568 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU352043 True 1059 lncRNA 0.44 3 NC_047613.1 17233977 ~ 17236111 (-)