RNA id: TCONS_00003347


Basic Information

Item Value
RNA id TCONS_00003347
length 700
lncRNA type sense_over
GC content 0.34
exon number 2
gene id XLOC_001068
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12105647 ~ 12126625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGGAGCGCTGGTAATCATCGggaatatgacagtggacacagaCTTTAGTTTTCCTAAGTTATAACGTCATAGCATTATATCAGGACTGTGTATTTGAGGTGCTactgtgttatttatttaatcagaGGGCTTTCTGACACACTTCTTCCCTCCACGGGCAGTTCGCGCTGTCTGGTTTCCATGATCACACCAGATGTTTACATTCTTGAGAATATTTATGGCAGTCTTGTACATGGGAAGATAATCGACCATGAATaaagattttgtgttttttttttttttttttggatttccTTTTTGGTCATCTTTTtggtgtaaatataaaaatataattggtGGGATTTACTGTCATGTCCCTTTGCTTGTTTGGTGTCTATCATTTGTACAGAATTTGTGTCTAAAATGTCCACTGAGGCttcattaaagtgacagttcagccaaaaatgaaagttctgtcatcatttgcgcTCCCTCTTGTCGTTACAGACCTGTAAATCTTTCTTTATTCTgtggaacataaaagaagatctATACGTTTAGAAAAATAATGGTAACTCGAATTAAATAGTTGACACAAGGACACAAAGGTGaatagtaaataatgacagaatttatttattttttggtggaATATCACTTTACATTGATAATAGATTAATTAAACAAGTAATtagtaagcttttttttttaaacacagg

Function

GO:

id name namespace
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001715 lncRNA downstream 36770 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00001712 lncRNA downstream 132313 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00003346 lncRNA downstream 391284 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00003345 lncRNA downstream 410255 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00003344 lncRNA downstream 588294 11470790 ~ 11517353 (-) True XLOC_001054
TCONS_00003348 lncRNA upstream 327642 12436858 ~ 12441010 (-) True XLOC_001072
TCONS_00001729 lncRNA upstream 443084 12552300 ~ 12564530 (-) False XLOC_001073
TCONS_00001730 lncRNA upstream 454975 12564191 ~ 12679517 (-) True XLOC_001073
TCONS_00001732 lncRNA upstream 566208 12675424 ~ 12677877 (-) False XLOC_001074
TCONS_00001731 lncRNA upstream 566208 12675424 ~ 12677983 (-) False XLOC_001074
TCONS_00001713 mRNA downstream 40848 12061284 ~ 12064799 (-) False XLOC_001066
TCONS_00001714 mRNA downstream 40932 12061923 ~ 12064715 (-) True XLOC_001066
TCONS_00001709 mRNA downstream 132306 11902579 ~ 11973341 (-) False XLOC_001065
TCONS_00001710 mRNA downstream 132306 11902582 ~ 11973341 (-) False XLOC_001065
TCONS_00001711 mRNA downstream 192477 11907309 ~ 11913170 (-) False XLOC_001065
TCONS_00001719 mRNA upstream 32660 12141876 ~ 12160981 (-) False XLOC_001069
TCONS_00001720 mRNA upstream 36427 12145643 ~ 12161148 (-) True XLOC_001069
TCONS_00001721 mRNA upstream 153764 12262980 ~ 12278056 (-) False XLOC_001070
TCONS_00001722 mRNA upstream 153764 12262980 ~ 12278079 (-) False XLOC_001070
TCONS_00001723 mRNA upstream 153764 12262980 ~ 12278522 (-) False XLOC_001070
TCONS_00001693 other downstream 1043000 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 1197026 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 1201761 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 1235406 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 1255696 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 566771 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 1673714 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 1766589 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 1965091 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 2406229 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

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