RNA id: TCONS_00003348


Basic Information

Item Value
RNA id TCONS_00003348
length 4020
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_001072
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12436858 ~ 12441010 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaatctttatttttactgAAGTAATATTTCATTAGGGTGTCTTTATTTCTGCTCAAGTATTGATTTGTGTACTTTATCCACCAATGGCTAGAGAGAAACCTgtttaaaaaagtcatttttgtaGTTCTGTCAGGTGACATACAGATATTACACAATGACATCAGATTTTACACTCAAACATGCGAAACAAAAAAGATTTCTTTTTTCATCCATAAGCACAGAAAGGATTTGATATGGATGTGTTTGAGAATAAAGAGCACACAAGTCAGCAGTAAAATCCCCCATCCTGCTCTTTTCTTACTCTCTGCATCCCTTCCGAACAAACCCCATGAGCCTTCACTAGCTAAAGAACCTTCCAGAATGACATTTGGTTTGATGAGCTCAACATtttctatataaatacaaatgtatttatatgaaaGAGAAGAGAAATAGATCCTTGTCGGGCTAAAAGTGTGCGCCGAGATGTGAATGTGCATTAAATTGCCATTTCTAGTCCAAGACACATACAATATTTGCCTTTGGGCCTGTGTTGAATCACGCAGGGCTATAACCAGCAGTTTTCCAGGACCTCTCCAATAGCCAAAGCACTATAAATACATTTCACACATGTCCTCGAGATATCCACAAAGATTATACGGTAGGATAAGATCATGTAGTGCAAATCCAAAACCATACAAATCATAGACGATGCCTGAAAACCTGACAGAAATATCAAAAGGTGGCGTCCATAACCGCTGCCCCTGTCCATGTTGTTTAATAAATGAGTCTAAGTGACATGAGTTCATTTGTCAAACCTTAATTGACCGAAAGTGGCTTTGAATGCTTTCTGATTTATTACTTGGGTGTACAGCGCTGCATTTGGGTGATGAGAGCGTCTCCGATGGAAAGATGGTGACTGAAtctaaaatatgtaaacaaatctCATGTTGCGATGATGATACGATATATTACCATTTCTGTAAATTTAATCAATTAGAAGTTATTAATATACattgcatctggaaagtattcatagcgcttcacttttttcacactttttttgttacagccttattccaaaatgaattaaattcatttatttcctctaaATTTTACAGACAATACCtcttaatgacaatgtgaaaaaaagactttttttttaattgttgcaaatttattaacagAACACATAGACAGCTGGAATCGTGACACTACTACTGTAGTTGAGATCCAAAAAATAGAATATTGACACTTAAATAAAATTCATGACACGTTTATAATGACTTTATgtcaatcatgtttatgacagatttatgacaagttatgttgatttgataatgtcaagttttcaaaacaaacaacaaaaatgtgatgtatttgtttgtcaagttgtcataacaaacaatgtcatatttCCATTTAAAAGGTCATAACTAAGCAAATGAcacttgttgtttgtttgtttgtttgtttgtttgactttaTTAATCTCAAAGGGAAAATCACGTCACAATAGAGCTCTctataaaaacagatcaaataagttacacatacataaaaacaataataaaattacatacaTACTGCACACCTTAGTTTCAGTATATGCTGAAATCCATATTTAATACGATTAAAATTCAGCATAATTCATGTAGTATGATTTTGGTTATACAATATGATCATTGTTGGTAGAAATTACTTCCTGTATCTTTCtctgtaacattcattcatttattttcttttcggcttagtccctttattaatctggggtcaccacagcggaatgaaccgccaacttttccagctcgtttttacgcaacggatgcccttccagctgcaacccatccctgggaaacatccatacacactcattcacactcatacactacagacaatttagcctacccaattcacctgtactgcatgtctttggactgtgggggaaaccggagcacctggaggaaacccaaccaaacgcagggagaacaagcaaacttcacatagaaagcCATCTGAccgagccaaggctcaaaccagcgaccttcttgctgaggcgacagcactacctactgcgccacagctttAATCTTGCACTGAAGGAGCTTGCACACGCATGGACTACATCATAAAGGGGATGATTATCTTGTCCCTTTCCCAGCAGGTTACGGCATACAGGATCATAGAAGACACCACAGAATCCTAAGTCTTTAACAGTGTCTGACACAAACCAAAGGACCTCAGTTATCTTAATAGAGTGCGACTCTGACCCTTCTTAAACACCTGAATTGTATTTTCAGACCAATTGAGCTTGTCATTTAGATATACACGCAGGTACTTATATGATGAAACAATCTCAATTGCTGACTCCTGCATCCACTTGTTGTGGATGTCTGCTAAAATCGACAATCATTTCTTTGCACCTATTGGTATTTAATTTAAGACAACTTGTTTTACACCAATCAGCAAACCTTTTTAAAAGCAACCTATACTCATTCTCATCATGATCCTTTATGTAACCGACAATTGCAGAGTCATCAGTAAACTTCTGTAGATGACCATTTCTGGTGCTGTATTGAAAATCCAACATAtagaatgtaaataaatatggagCTGTTGTTATAAGCGTGCATAAATTTACATTCACATcctttcaagtaaagtgttacccaacttTCTCACAATActtttattcatgtttctgtctgcattcCCATTATGGTGTGTAATATTGCACTTATATGAAAAAGTATTACAATAAACAAATGGAACATAATATGAAATGAtatactttttcattcattcattttcctttggctcagtcccttatttatcaggggttgccacagcgaaatgaactgccaactatttctgcatatgttttaggcaatggatgtccttccagctgcaacccaactactggcaaacacccatacattcacccaattcacctatagtgcatgtatttggactgttggggaaaccggagcacccggaggaaacaagcacgaagagaacatgcaaactccacacagaaatgcccactggcacagccggaactcgaaccagtgaccttgatgctgtaaggcgacagtgctaaccactcagacACCATGCCGTGCTCGTGATAGACGTTTTATTTCGTCTATATAACATATATGGTTATATTGCACAGCACTCCAAACAACACTAAGCTCTTATCTCCATTTCTGCCAGTTACTAAAATCCCAcatcaaaataaagaaaacaccCACAAGAAAAGCTTTGCTGGCTGCTTCTCGTGACCTTGACAGGTTGGAGTTTAGTGGGAGTCCGAGTCGGATTTACTGTGGATCTGGCAAGCAAGACAGGCTGTGGTAAAAAGCCAAAGAGGAGGAATTTTGTTATGTGACATATGCTAAAAGGACTCTGCCATATACCCCCATTTAAActcctctctcgctctctcgTTTTTGTCTTGGTTTCTCTCATCAAATTGAACCATGGGGGAAATCATGCAGGCTAGACGATTGTAAAAATGTGGACTACATTCACAAGTAGTTCTTGCTGTCAATTAGAGCACTCTTTTCTGGACACAAACACCACcgcaaatgactttttttttttttgaccagtaAGAAAAATTGAGTTTGCATATTTGTAATAccattaaagggattgttcagaCCATTTATCCACCCTCAAGGGGCTCCTTATGAGTTtctatttctgttgaacactttaGAAGATACTTtgtaaaatgcaataataatattaaacagcaTTTAATTCATATGATCACACTTTTTTAAGGTACAGTTCTCACTCAAAGCATTAAtttgacttttagctcaataaactcctaattagctgcttattaatagttttcaTGGTAGTAGTTGAGTGTAGGTGTAAGGTacgtagaataagatcataaagAATATGTGCTTAATAGGTACAAAATAACAGCTAatatctgaataataataatatgagaaTTGGTACTTTAACTAACtggtatttaaattaaaatgtattgttttactttaattttgtttttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003347 lncRNA downstream 327642 12105647 ~ 12109216 (-) False XLOC_001068
TCONS_00001715 lncRNA downstream 367981 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00001712 lncRNA downstream 463524 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00003346 lncRNA downstream 722495 11711543 ~ 11714363 (-) True XLOC_001062
TCONS_00003345 lncRNA downstream 741466 11693157 ~ 11695392 (-) True XLOC_001061
TCONS_00001729 lncRNA upstream 111290 12552300 ~ 12564530 (-) False XLOC_001073
TCONS_00001730 lncRNA upstream 123181 12564191 ~ 12679517 (-) True XLOC_001073
TCONS_00001732 lncRNA upstream 234414 12675424 ~ 12677877 (-) False XLOC_001074
TCONS_00001731 lncRNA upstream 234414 12675424 ~ 12677983 (-) False XLOC_001074
TCONS_00003349 lncRNA upstream 383077 12824087 ~ 13022717 (-) False XLOC_001075
TCONS_00001728 mRNA downstream 39600 12388203 ~ 12397258 (-) True XLOC_001071
TCONS_00001727 mRNA downstream 42757 12384276 ~ 12394101 (-) False XLOC_001071
TCONS_00001725 mRNA downstream 42810 12364456 ~ 12394048 (-) False XLOC_001071
TCONS_00001726 mRNA downstream 43798 12364789 ~ 12393060 (-) False XLOC_001071
TCONS_00001724 mRNA downstream 158277 12263080 ~ 12278581 (-) True XLOC_001070
TCONS_00001736 mRNA upstream 819799 13260809 ~ 13271569 (-) False XLOC_001077
TCONS_00001737 mRNA upstream 820113 13261123 ~ 13271085 (-) True XLOC_001077
TCONS_00001745 mRNA upstream 1516225 13957235 ~ 13964284 (-) False XLOC_001084
TCONS_00001746 mRNA upstream 1516225 13957235 ~ 13968153 (-) False XLOC_001084
TCONS_00001747 mRNA upstream 1517272 13958282 ~ 13989643 (-) True XLOC_001084
TCONS_00001693 other downstream 1374211 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 1528237 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 1532972 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 1566617 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 1586907 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001733 other upstream 234977 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001743 other upstream 1341920 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 1434795 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 1633297 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 2074435 14515445 ~ 14515539 (-) True XLOC_001094

Expression Profile

//