RNA id: TCONS_00001732


Basic Information

Item Value
RNA id TCONS_00001732
length 907
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_001074
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12675424 ~ 12677983 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATACCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAATAAAAGGAGCACATTTGAAACTTTAGTAACCATAAAAAGTACACCAAGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGGACGCGGTCAGTTTGAAATCTGGGCCAGTTCTGCAGATGATCAGATGGAGTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCAATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCAGGTGGACTGATGCAGGGTCTCGTTTAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTTCACCAGCCATCCAGAactaagtttgggcacccctgcattaCAGCTTTTCAAGGATGCTGCTGTGGACTTCTTTACACTCACCACACACACCAATCTGCAGATATTTCAAAtcatacaaaacataaaaaaacattcaaaaaacaaagtaattttacTGCACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATGATCCTACCTCTTATTTTGGATTATTTTTACCTCAAATGTGTTAGTTCCCTTGTCTACAGGTCCAGCTCCATCACAACAGCTCTGcagaaaaatcacacacacacaacagcaatcAGAAAGCTGATGTAATCACTGTttgaaaatacaataactaacaataaatagcaaatgtaaaatatgtttttttagttCCTGTACTGTACTCAATAAAAGCC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001729 lncRNA downstream 110894 12552300 ~ 12564530 (-) False XLOC_001073
TCONS_00003348 lncRNA downstream 234414 12436858 ~ 12441010 (-) True XLOC_001072
TCONS_00003347 lncRNA downstream 566208 12105647 ~ 12109216 (-) False XLOC_001068
TCONS_00001715 lncRNA downstream 606547 12065156 ~ 12068877 (-) True XLOC_001067
TCONS_00001712 lncRNA downstream 702090 11940161 ~ 11973334 (-) True XLOC_001065
TCONS_00003349 lncRNA upstream 146210 12824087 ~ 13022717 (-) False XLOC_001075
TCONS_00003350 lncRNA upstream 205468 12883345 ~ 13022717 (-) False XLOC_001075
TCONS_00003351 lncRNA upstream 324038 13001915 ~ 13022717 (-) False XLOC_001075
TCONS_00003352 lncRNA upstream 336798 13014675 ~ 13022792 (-) False XLOC_001075
TCONS_00002918 lncRNA upstream 341083 13018960 ~ 13022736 (-) True XLOC_001075
TCONS_00001728 mRNA downstream 278166 12388203 ~ 12397258 (-) True XLOC_001071
TCONS_00001727 mRNA downstream 281323 12384276 ~ 12394101 (-) False XLOC_001071
TCONS_00001725 mRNA downstream 281376 12364456 ~ 12394048 (-) False XLOC_001071
TCONS_00001726 mRNA downstream 282364 12364789 ~ 12393060 (-) False XLOC_001071
TCONS_00001724 mRNA downstream 396843 12263080 ~ 12278581 (-) True XLOC_001070
TCONS_00001736 mRNA upstream 582932 13260809 ~ 13271569 (-) False XLOC_001077
TCONS_00001737 mRNA upstream 583246 13261123 ~ 13271085 (-) True XLOC_001077
TCONS_00001745 mRNA upstream 1279358 13957235 ~ 13964284 (-) False XLOC_001084
TCONS_00001746 mRNA upstream 1279358 13957235 ~ 13968153 (-) False XLOC_001084
TCONS_00001747 mRNA upstream 1280405 13958282 ~ 13989643 (-) True XLOC_001084
TCONS_00001693 other downstream 1612777 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 1766803 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 1771538 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 1805183 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001684 other downstream 1825473 10824660 ~ 10849951 (-) False XLOC_001048
TCONS_00001743 other upstream 1105053 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 1197928 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 1396430 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 1837568 14515445 ~ 14515539 (-) True XLOC_001094
TCONS_00001759 other upstream 1875344 14553221 ~ 14553315 (-) True XLOC_001097

Expression Profile

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