RNA id: TCONS_00003352


Basic Information

Item Value
RNA id TCONS_00003352
length 1609
lncRNA type inter_gene
GC content 0.34
exon number 4
gene id XLOC_001075
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12824087 ~ 13022792 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGATGGAGACAAAATGGCTGTGTTTAAAAGAATCATTTATTTGATCATACTGAATCATTTAGGACCATTACCACATTTACCACTGTTTCATCCATTACGAGTCATTGAATTGTTCGTTTAACTGATTCGAACATTCAGGAAGTGAACAGCAACATCCCAGCTGCAATCCCGCTGCAAGAATAGAGAAATGACGCCCCATGGCTTGACCAAAGTGCTAATTGCTATAGGCTAACGTTACTCGTTTAATGTCAAATCATGACGAACATGTCAAGCAGATGGACTCTTCACAAATCTGAGAACACGTCGGTAATCCTGCTTCTTGACAGATGGTTGACCGTGCCACGGCTGCGTTCTCTGCAGAGATGCTTTTTGTAGAGCTTGGTCTCTTGAGGATAATGACGGCCATAAGATCGCTTTGTCACTGACATCACAAGATGTATGGCACACCTCTTAAGATACACGCTGTCACTTTGAAATCTGAAGCAGCGGAATTCCATCCAATTTTTCCCAGGACTCTCATTGGCGTTTTGCTGGACTATCCTCGTGTCCTGAACTCGTGTCCTGTTTCAGCGTTCgggtcgttgttgttgttttttttttttttttttttgactattttGCACATTTTGATCTATGACACTTGCATTTGGATTTatcaatgtttgtttttgtttaaatttagcatgctaaattaagtattaaaagttaATAGTCATTATTGATTAATGTTTAATTGatttttataacaatttttttttttataaccaaaACTTGTCACACACTGAAAACTTCTACTGATAATTATTCGTAAAGCAAGTGTGCGAACAAGTtacaataacaaaatatataatgcatcctagggctgcacaataaattgTTACAACGTCCATGTTGCAATGTGTTAATTCGCAATAGTCGCATCGCAGAATAtgtaatgttgagtttgtattataatctACCATTTGCATGTTTCTgatgattttaaaaacacttattgatttaaaacattatttatattatttgacaCGGAAAACGATAAAAAAGCAGGTGTTAATTCCAGTTCCTggggggccgcagctctgcacagtttagttccacccTTAATTAAACACAACTCATCAAACTAATTGAATCCTCCAAGCTTGTTTGAAACCCACAGATAAgggtgttgaagcagggttggaactaaactgtgcaaagctgcggccctccaggaactggaattgacacctgggataaaacaaagtaaataaaacgataaacaagcaaacaaacaaaatgtatttaaatttttcattgtattcatttatgcttGTAGActagatttattatattttatgcacgaTTCACTTACATCCAAATTAACAGAACATgatcaattaatttaaaaaagaaatattaagTAATTAATAAGAGAAATTATACTCAATATTGCAATATGTATTgcagaataaaaattaaaaaaaaactgcaatgtcagatttttccaatattttgcagccctaatgtagcctataatatatataaaatttgtaaCTACAATGTGTGCTAAGCATCATACTATACATCAAAACATAATACATACTGTATGTCTACCGGATACATAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001730 lncRNA downstream 335158 12564191 ~ 12679517 (-) True XLOC_001073
TCONS_00001731 lncRNA downstream 336692 12675424 ~ 12677983 (-) False XLOC_001074
TCONS_00001732 lncRNA downstream 336798 12675424 ~ 12677877 (-) False XLOC_001074
TCONS_00001729 lncRNA downstream 450145 12552300 ~ 12564530 (-) False XLOC_001073
TCONS_00003348 lncRNA downstream 573665 12436858 ~ 12441010 (-) True XLOC_001072
TCONS_00003353 lncRNA upstream 43212 13066004 ~ 13203916 (-) False XLOC_001076
TCONS_00001734 lncRNA upstream 54675 13077467 ~ 13203911 (-) False XLOC_001076
TCONS_00002919 lncRNA upstream 156902 13179694 ~ 13184311 (-) False XLOC_001076
TCONS_00001735 lncRNA upstream 156902 13179694 ~ 13203923 (-) False XLOC_001076
TCONS_00002920 lncRNA upstream 156902 13179694 ~ 13203997 (-) True XLOC_001076
TCONS_00001728 mRNA downstream 617417 12388203 ~ 12397258 (-) True XLOC_001071
TCONS_00001727 mRNA downstream 620574 12384276 ~ 12394101 (-) False XLOC_001071
TCONS_00001725 mRNA downstream 620627 12364456 ~ 12394048 (-) False XLOC_001071
TCONS_00001726 mRNA downstream 621615 12364789 ~ 12393060 (-) False XLOC_001071
TCONS_00001724 mRNA downstream 736094 12263080 ~ 12278581 (-) True XLOC_001070
TCONS_00001736 mRNA upstream 238017 13260809 ~ 13271569 (-) False XLOC_001077
TCONS_00001737 mRNA upstream 238331 13261123 ~ 13271085 (-) True XLOC_001077
TCONS_00001745 mRNA upstream 934443 13957235 ~ 13964284 (-) False XLOC_001084
TCONS_00001746 mRNA upstream 934443 13957235 ~ 13968153 (-) False XLOC_001084
TCONS_00001747 mRNA upstream 935490 13958282 ~ 13989643 (-) True XLOC_001084
TCONS_00001733 other downstream 336960 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001693 other downstream 1952028 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 2106054 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001691 other downstream 2110789 10893322 ~ 10903886 (-) False XLOC_001048
TCONS_00001689 other downstream 2144434 10870117 ~ 10870241 (-) True XLOC_001049
TCONS_00001743 other upstream 760138 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001744 other upstream 853013 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001748 other upstream 1051515 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 1492653 14515445 ~ 14515539 (-) True XLOC_001094
TCONS_00001759 other upstream 1530429 14553221 ~ 14553315 (-) True XLOC_001097

Expression Profile

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