RNA id: TCONS_00001747


Basic Information

Item Value
RNA id TCONS_00001747
length 2364
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_001084
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 13957235 ~ 13989643 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attatttattatttcattaaacatCGAGGCAGTAATTAACTTCTGAGGGTgtgggctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctttatcttctttctctttctctcggtCGGTGTCTTACTGCTATGATTCTGAGCTGGATACAGTCTGCAAAAACAACATTGTGTCCTCTGTGCCTGATCACCATAGAGTCTGGTTTGACTTGCACTAGTGGGTAGTGCTGGAggcccatcatcatcatcatcatcagtagtCAGTGAACTAGTTCAGTGTGTCTGTTTGGAGAGACccgtatatatgtgtatgtgatGATCAGGTGTGTTAGCGTTTAGCCGCTAACGACAACAGTCTGACGGGCTCTCACACACCACCGCGGCCAAACTCCATGTTTCTTATATCTGTGTAAACCAGACCTACTCAGAGCGTGGGTTTTATTCGGAAAATCAGCTTTTTAAGTCCTGGAGTTTGCCACAGGAGGTCAGCAGAGTGTGGGGTATGAGTCATGACTTCTGTGGTGCTTGTAGACAGTGGAGGAGCAGTGGTGGAGTATGTCACTGCAGTCGATGACCATTTACCGGAGGAGGGTGGCGTGTATGAGGTGGAGGGTGAAATGGAGGGAGAGGTGGAGGGCGATGTGGAGTATCCAGCAGTGATTGTGGAGCCAGTGCCCAGCGCGCGGATGGAGCAAGGCTTTGCTGCTCAGGTGCTGGTGTACGATGATGAGACATACCTGATGCAGGGAGTAGCTGAGGAGCAGGAGGTGGAGACAGAGGTGCTGGAGACAGTGGAAGCATCAGTTCATGGTGTGCAATGCTCTGATAAAACCATCGAGGCCGCTGAAGCCCTTCTTCACATGGACTCTCCCTCCAGTTTGCGTGGAGACAGAAGCCCAGAGGTGTTTGTGCCTCCATGTGTCAACACTTCAGAGTTCCTGCATGCTGCCATGCGACCTGATGTGCTGACCGAGACGGTGGTTGAGGTCAGCACTGAGGACATGGAGCCCATGGAGGTGGTTACTGTCATTCAGGAGCCTGAGATGCTGGACACTGAACCCAGCAAGAGAAGAAAATcgGGGAGGAAGCCCAAACCCCATCACATTTCTAATGGATCTCCAGATATGGGTATCAAGAAGAAGTCTAGAGAAGGAAAAGGAAGTACATACCTGTGGGAGTTCCTGTTGGACCTGCTGCAGGATAAGAACACCTGTCCCAGATACATCAAGTGGACACAGAGAGAGAAGGGCATCTTTAAGCTGGTGGACTCCAAAGCGGTCTCAAAACTCTGGggcaaacacaaaaacaaaccagACATGAACTATGAAACCATGGGTAGAGCGCTCAGGTATTACTATCAGAGAGGCATCTTGGCTAAAGTCGAGGGTCAGAGGTTGGTGTATCAGTTTAAGGAAATGCCTAAAGACATTGTTGTCATCGATGATGACAAGTGTGACCCGGGTGATGATGTAATAGGAGAGAAGACCTACGAGCGCGTTCCTCCTTCATCTGACACTCTATTGACTGATCTTTCCAAAACCCCGACCATCTTGAGAGCGGCCGACAGGACTGTGCTTCATCCAGGCTCCCCGAAAGCTAAAGCTGCACTCACTGCAACTCCTGTTCAGCGCACAGTAATGGTGTCCACAGCAGATCCGTCCCATGCCACCATTATTTCCAATGCTAATGCACCCAGGACTGTGCGGGTTGCCATGCAAGTGCCGGTCGTCATGACTAATTCTTTGGGACAGAAGATCTCCACGGTGGCCGTTCAGTCCACTAACCCCTCGCTCCTCACCACAGCGCCCACCAACACCGGCTCACCGACTGGCACCAACGCCCCTAAAGTCTTGATCCAGACCATGCCAACGATGGTGCCCGCCACCGCAGAGAACGGAGATAAGATCACGGTCCAGCTCGCCAAGATTATCACCATCCCCGCAACCCAGCTCACGCAGTGCCAGCTACAGGCCAAACCCGGCACCCCAACAGGTATCAATCTAATGGGTGCTCCGCTCACAGTCCGGGCTCTGACACCCATGTCTGTGGCACCAGGGACGCAGGTGGTTAGACTGGCTGTTCCAGCCCAGCAAAGTCCAGTGCAGGCAAAGACGCAAGTACCTGTTTCAATCCAAACGCAAACTCGCATCCCAATCTCCGTTCAGACTGCATCTACTGTACAGTCAGTCCCGCTGCAGATCCAGATTCAACAGAGCCAACTCTCTCCAAAAGAAAAGACAACAGAATCCAAACCTGACATCACCGTGCTGGACAATCCCACGCTCAAAGTGCCAGAGGAAGCTTCAAACCCACAGTCTGAAGCCGAGAGCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031215-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELF2 (E74 like ETS transcription factor 2).

Ensembl:

ensembl_id ENSDART00000191046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003366 lncRNA downstream 26782 13853471 ~ 13931500 (-) False XLOC_001083
TCONS_00003365 lncRNA downstream 70945 13853471 ~ 13887337 (-) False XLOC_001083
TCONS_00003364 lncRNA downstream 211164 13733386 ~ 13747118 (-) True XLOC_001081
TCONS_00002922 lncRNA downstream 355444 13596854 ~ 13602838 (-) False XLOC_001080
TCONS_00003367 lncRNA upstream 118057 14107700 ~ 14115410 (-) True XLOC_001086
TCONS_00002923 lncRNA upstream 408109 14397752 ~ 14406391 (-) True XLOC_001090
TCONS_00002926 lncRNA upstream 442411 14432054 ~ 14454434 (-) False XLOC_001092
TCONS_00003368 lncRNA upstream 442411 14432054 ~ 14454434 (-) False XLOC_001092
TCONS_00002925 lncRNA upstream 442411 14432054 ~ 14454434 (-) False XLOC_001092
TCONS_00001736 mRNA downstream 686713 13260809 ~ 13271569 (-) False XLOC_001077
TCONS_00001737 mRNA downstream 687197 13261123 ~ 13271085 (-) True XLOC_001077
TCONS_00001728 mRNA downstream 1561024 12388203 ~ 12397258 (-) True XLOC_001071
TCONS_00001727 mRNA downstream 1564181 12384276 ~ 12394101 (-) False XLOC_001071
TCONS_00001725 mRNA downstream 1564234 12364456 ~ 12394048 (-) False XLOC_001071
TCONS_00001749 mRNA upstream 173863 14163506 ~ 14234076 (-) False XLOC_001087
TCONS_00001750 mRNA upstream 176966 14166609 ~ 14233815 (-) True XLOC_001087
TCONS_00001751 mRNA upstream 267515 14257158 ~ 14258409 (-) True XLOC_001088
TCONS_00001752 mRNA upstream 324207 14313850 ~ 14332283 (-) True XLOC_001089
TCONS_00001753 mRNA upstream 428142 14417785 ~ 14426804 (-) False XLOC_001091
TCONS_00001744 other downstream 82361 13875805 ~ 13875921 (-) True XLOC_001083
TCONS_00001743 other downstream 175236 13782930 ~ 13783046 (-) True XLOC_001082
TCONS_00001733 other downstream 1280567 12675987 ~ 12677715 (-) True XLOC_001074
TCONS_00001693 other downstream 2895635 11062524 ~ 11062647 (-) True XLOC_001051
TCONS_00001692 other downstream 3049661 10901066 ~ 10908621 (-) True XLOC_001048
TCONS_00001748 other upstream 84664 14074307 ~ 14074375 (-) True XLOC_001085
TCONS_00001757 other upstream 525802 14515445 ~ 14515539 (-) True XLOC_001094
TCONS_00001759 other upstream 563578 14553221 ~ 14553315 (-) True XLOC_001097
TCONS_00001760 other upstream 570748 14560391 ~ 14560485 (-) True XLOC_001098
TCONS_00001762 other upstream 604062 14593705 ~ 14593798 (-) True XLOC_001101

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014606 True 4168 mRNA 0.42 8 CM030128.1 19296416 ~ 19317255 (+)