RNA id: TCONS_00024474


Basic Information

Item Value
RNA id TCONS_00024474
length 478
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id XLOC_011563
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33102503 ~ 33111166 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAGCACTTGACCTATCTGATGTGACATTCCACCCCACCCTTTCCCTTACGCACGGCACAGGCGCTTTATGAGGGTGGTATCCTTCTCTCTCCACAGgcctttatttctgaaagaaaAGAGGGGATGAGAGAGAAGAGCAGAAGGGGGAGAGGTTGATGTTGTGTGGGTGTTCGCTTCGGCACACACAGCACATGTCTCCCCCTGCCGGTCAAGGCACAACACTGAGGAAACCTTTCGACAATAGGAATTTCAGAAACATCTGCGACAAAGTTGAtaatcccccccaaaaaatgacagaaaactaCCAAGCTGTGGAGGAACAATCTCTAAGCAACAACATTTTTCCTCTGGAAAGTAGAGCGGCGAGGACAGAGCCCAGGTTCAGCAGGAGCCAGGCAACTGTGAGGTCGGAGAGGTGCATTATTTAGTGGGACAGAAGGAGTTGGCGGGCTGGAGGAGCGAGCGTGTGTTCACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024716 lncRNA upstream 231687 32780702 ~ 32870816 (+) False XLOC_011562
TCONS_00024715 lncRNA upstream 231687 32780702 ~ 32870816 (+) False XLOC_011562
TCONS_00024718 lncRNA upstream 231687 32780773 ~ 32870816 (+) True XLOC_011562
TCONS_00024714 lncRNA upstream 265264 32780702 ~ 32837239 (+) False XLOC_011562
TCONS_00024717 lncRNA upstream 265264 32780773 ~ 32837239 (+) False XLOC_011562
TCONS_00024475 lncRNA downstream 8620 33118538 ~ 33120510 (+) True XLOC_011564
TCONS_00024476 lncRNA downstream 10662 33120580 ~ 33121796 (+) True XLOC_011565
TCONS_00023030 lncRNA downstream 74419 33184337 ~ 33194021 (+) True XLOC_011566
TCONS_00023045 lncRNA downstream 323648 33433566 ~ 33436811 (+) False XLOC_011574
TCONS_00024477 lncRNA downstream 1068274 34178192 ~ 34182830 (+) True XLOC_011579
TCONS_00023018 mRNA upstream 472220 32622933 ~ 32630283 (+) False XLOC_011558
TCONS_00023022 mRNA upstream 472829 32623931 ~ 32629674 (+) False XLOC_011558
TCONS_00023015 mRNA upstream 493982 32571584 ~ 32608521 (+) True XLOC_011557
TCONS_00023014 mRNA upstream 551247 32531854 ~ 32551256 (+) True XLOC_011556
TCONS_00023011 mRNA upstream 575183 32374876 ~ 32527320 (+) False XLOC_011552
TCONS_00023029 mRNA downstream 48432 33158350 ~ 33201840 (+) False XLOC_011566
TCONS_00023031 mRNA downstream 117037 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023032 mRNA downstream 186518 33296436 ~ 33309689 (+) False XLOC_011568
TCONS_00023033 mRNA downstream 186934 33296852 ~ 33304049 (+) True XLOC_011568
TCONS_00023035 mRNA downstream 201866 33311784 ~ 33339480 (+) False XLOC_011570
TCONS_00023027 other upstream 400682 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 449998 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023025 other upstream 470989 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023024 other upstream 472313 32624890 ~ 32630190 (+) False XLOC_011558
TCONS_00023019 other upstream 474763 32622943 ~ 32627740 (+) False XLOC_011558
TCONS_00023028 other downstream 48376 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023034 other downstream 188430 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023050 other downstream 475428 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023073 other downstream 2805092 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 3504397 36614315 ~ 36614432 (+) True XLOC_011593

Expression Profile

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